Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D9C09_RS11760 Genome accession   NZ_CP032852
Coordinates   2242747..2243211 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2237747..2248211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS11740 (D9C09_11740) kinA 2238215..2240047 (+) 1833 WP_069837479.1 sporulation histidine kinase KinA -
  D9C09_RS11745 (D9C09_11745) dapX 2240044..2241225 (-) 1182 WP_014479654.1 aminotransferase A -
  D9C09_RS11750 (D9C09_11750) - 2241427..2241588 (-) 162 WP_003245246.1 hypothetical protein -
  D9C09_RS11755 (D9C09_11755) cheV 2241792..2242703 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  D9C09_RS11760 (D9C09_11760) kre 2242747..2243211 (-) 465 WP_003232406.1 YkyB family protein Regulator
  D9C09_RS11765 (D9C09_11765) ykuC 2243337..2244629 (-) 1293 WP_014479656.1 MFS transporter -
  D9C09_RS11770 (D9C09_11770) ltdD 2244705..2245199 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  D9C09_RS11775 (D9C09_11775) ppeE 2245256..2246116 (-) 861 WP_015483175.1 metallophosphoesterase -
  D9C09_RS11780 (D9C09_11780) fadH 2246259..2247023 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=319177 D9C09_RS11760 WP_003232406.1 2242747..2243211(-) (kre) [Bacillus subtilis subsp. subtilis strain GFR-12]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=319177 D9C09_RS11760 WP_003232406.1 2242747..2243211(-) (kre) [Bacillus subtilis subsp. subtilis strain GFR-12]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment