Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D8M16_RS14720 Genome accession   NZ_CP032841
Coordinates   2970007..2970633 (-) Length   208 a.a.
NCBI ID   WP_121479132.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain C15117     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2965007..2975633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8M16_RS14705 helD 2965246..2967300 (-) 2055 WP_121479129.1 DNA helicase IV -
  D8M16_RS14710 - 2967423..2967869 (+) 447 WP_121479130.1 YccF domain-containing protein -
  D8M16_RS14715 yccS 2967888..2970050 (+) 2163 WP_121479131.1 YccS family putative transporter -
  D8M16_RS14720 sxy/tfoX 2970007..2970633 (-) 627 WP_121479132.1 TfoX/Sxy family DNA transformation protein Regulator
  D8M16_RS14725 sulA 2970851..2971360 (+) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  D8M16_RS14730 ompA 2971717..2972769 (+) 1053 WP_017694761.1 porin OmpA -
  D8M16_RS14735 matP 2972835..2973287 (-) 453 WP_003858158.1 macrodomain Ter protein MatP -
  D8M16_RS14740 - 2973474..2975234 (+) 1761 WP_121479133.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23919.43 Da        Isoelectric Point: 9.2159

>NTDB_id=319093 D8M16_RS14720 WP_121479132.1 2970007..2970633(-) (sxy/tfoX) [Enterobacter hormaechei strain C15117]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=319093 D8M16_RS14720 WP_121479132.1 2970007..2970633(-) (sxy/tfoX) [Enterobacter hormaechei strain C15117]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGGCAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment