Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACRYD_RS04510 Genome accession   NZ_CP032825
Coordinates   913312..914661 (-) Length   449 a.a.
NCBI ID   WP_066157124.1    Uniprot ID   A0AA96DU37
Organism   Aliarcobacter cryaerophilus D2610     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908312..919661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRYD_RS04485 (ACRYD_0894) murJ 908894..910237 (-) 1344 WP_120986516.1 murein biosynthesis integral membrane protein MurJ -
  ACRYD_RS04490 (ACRYD_0895) - 910234..911808 (-) 1575 WP_120986518.1 endonuclease/exonuclease/phosphatase family protein -
  ACRYD_RS04495 (ACRYD_0896) - 911989..912396 (+) 408 WP_066222427.1 Fur family transcriptional regulator -
  ACRYD_RS04500 (ACRYD_0897) ybeY 912398..912817 (-) 420 WP_066157117.1 rRNA maturation RNase YbeY -
  ACRYD_RS04505 (ACRYD_0898) - 912883..913296 (+) 414 WP_066168928.1 thioesterase family protein -
  ACRYD_RS04510 (ACRYD_0899) radA 913312..914661 (-) 1350 WP_066157124.1 DNA repair protein RadA Machinery gene
  ACRYD_RS04515 (ACRYD_0900) polA 914801..917485 (+) 2685 WP_120986520.1 DNA polymerase I -
  ACRYD_RS04520 (ACRYD_0901) - 917528..918505 (+) 978 WP_120986522.1 calcium/sodium antiporter -
  ACRYD_RS04525 (ACRYD_0902) - 918586..919095 (+) 510 WP_120986524.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49375.74 Da        Isoelectric Point: 6.5124

>NTDB_id=319015 ACRYD_RS04510 WP_066157124.1 913312..914661(-) (radA) [Aliarcobacter cryaerophilus D2610]
MAKKKNTLFECQHCGEQSSKWLGKCPSCDSWDSFLELNEVQQEVLKQTITANSSSSKARPITEILQDDVSRFSSFNYEFD
LVLGGGVVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSGKKVLYVSGEESAGQIKLRANRLDANHNELFLLSEIKLEEIMS
ELLRIDYEVCIIDSIQTIYSGHLNSSPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTQEGLVSAKDIASKFFDKSKSQSGSSLTVSMEGSRAIILEVQALVSETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKTNLKLDLKTFAVDEVSKVIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=319015 ACRYD_RS04510 WP_066157124.1 913312..914661(-) (radA) [Aliarcobacter cryaerophilus D2610]
ATGGCAAAGAAAAAAAATACTCTATTTGAGTGCCAACATTGTGGTGAACAATCTAGTAAATGGCTTGGAAAATGTCCTAG
TTGCGACTCTTGGGATAGTTTTCTAGAGTTAAATGAAGTACAACAAGAGGTTTTAAAGCAAACCATAACAGCGAATAGTT
CTAGTTCAAAAGCAAGACCAATAACAGAGATTTTACAAGATGATGTTTCAAGATTTTCATCTTTTAATTATGAATTTGAT
TTAGTTTTAGGTGGAGGAGTTGTTCCTGGAAGTTTAACACTTATTGGAGGAAGCCCAGGAGTTGGAAAATCAACTCTTCT
TTTAAAAGTTGCAGGAAGTATTGCAAAGTCAGGCAAAAAAGTACTTTATGTATCTGGAGAAGAGAGTGCTGGACAGATAA
AACTAAGAGCAAATCGTCTTGATGCAAACCACAATGAACTGTTTTTATTAAGTGAGATAAAACTTGAAGAGATTATGAGT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGACTCAATTCAAACAATATATTCAGGTCATTTAAACTCAAGCCC
TGGAAGTGTTTCACAAGTTAGAGAGATTACTTTTGAGCTTATGAGAAAAGCAAAAGAGTCAAATATTGCTATGTTTATAA
TTGGTCATATTACAAAAGATGGAAGCATCGCAGGTCCTAGAGTGTTAGAACATATGGTTGATACAGTTTTATACTTCGAA
GGAGAAGCAAGCAGGGAACTAAGGATGTTAAGAGGTTTCAAAAATAGGTTTGGTTCAACTTCAGAAATTGGAATTTTTGA
GATGACACAAGAAGGACTTGTAAGTGCAAAAGATATAGCGTCAAAATTTTTTGATAAAAGCAAAAGTCAAAGTGGTTCAA
GTTTAACTGTTAGTATGGAAGGAAGCCGTGCAATTATTCTTGAAGTTCAAGCACTTGTAAGCGAAACAACTTTTCCAAAT
CCAAAAAGAAGTGCCACAGGTTTTGATACAAACCGTTTAACTATGCTTTTAGCTCTTTTAGAGAAAAAATTAGACTTACC
TTTTAATCATTATGATGTGTTTATAAATATTAGTGGTGGAATAAAGATTAAAGAGAGTAGTGCTGATTTAGCAGTAATTG
CTGCAATTATCTCAAGTTTTAGAGATAGACCAATTTCAAAAGAGTCTGTATTTATTGGTGAAGTTTCACTAACTGGTGAA
ATAAAAGATGTTTATTCTATAGATTTAAGATTAAAAGAGGCTCAAGCTCAAGGAATTAAAAAAGCAATAATTGCTCAAAA
AACGAATCTAAAATTAGATTTAAAAACTTTTGCAGTTGATGAAGTATCAAAAGTAATAGAGCTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.788

100

0.481
  radA Streptococcus pneumoniae Rx1

47.788

100

0.481
  radA Streptococcus pneumoniae D39

47.788

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.788

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

50.35

95.546

0.481
  radA Streptococcus mitis SK321

47.566

100

0.479
  radA Streptococcus mitis NCTC 12261

49.65

95.546

0.474

Multiple sequence alignment