Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACRYD_RS03585 Genome accession   NZ_CP032825
Coordinates   730615..732456 (-) Length   613 a.a.
NCBI ID   WP_120986311.1    Uniprot ID   -
Organism   Aliarcobacter cryaerophilus D2610     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 725615..737456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRYD_RS03570 (ACRYD_0712) - 726073..727200 (+) 1128 WP_120986306.1 iron-containing alcohol dehydrogenase -
  ACRYD_RS03575 (ACRYD_0713) - 727236..729512 (-) 2277 WP_120986308.1 methyl-accepting chemotaxis protein -
  ACRYD_RS03580 (ACRYD_0714) - 729591..730622 (-) 1032 WP_120986310.1 alanine racemase -
  ACRYD_RS03585 (ACRYD_0715) uvrC 730615..732456 (-) 1842 WP_120986311.1 excinuclease ABC subunit UvrC Machinery gene
  ACRYD_RS03590 (ACRYD_0716) - 732577..735027 (+) 2451 WP_120986313.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71220.39 Da        Isoelectric Point: 9.1094

>NTDB_id=319014 ACRYD_RS03585 WP_120986311.1 730615..732456(-) (uvrC) [Aliarcobacter cryaerophilus D2610]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITKEEYKKLLDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLATNEDLDIFAIKSASKKAVIVRMFIRDGKLASSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLDKRFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLQTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QISGIGEAKIKKLLLYFGEFEKIKSASLDELKAVLNEVDSKNIFDYFRKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=319014 ACRYD_RS03585 WP_120986311.1 730615..732456(-) (uvrC) [Aliarcobacter cryaerophilus D2610]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTCAAATTTACTCCAAAACTCTTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATAAAACAACTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACCTATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATAACAAGAAAAATAGAGAAAGGTAAAAATATAAAATATT
TTGGTCCATACTCAAGTGGCGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCATTGGTACAAAAAAAATCTTGT
ATAAAAGGAAAGAGTGCTTGTCTATTTTACCAAATAGGAAAATGTAAAGCTCCTTGTGAGCAAAAAATAACAAAAGAAGA
GTATAAAAAACTTTTAGATGAAGCTTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAGGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGAATAGATTTAGCAACAAATGAAGATTTAGATATATTTGCTATAAAATCTGCTAGTAAAAAAGCTGTGATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGCATCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATACAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATTCCAAAAGAGATTATTGTAGCT
GATGAAATTTTGGATTTAGATGATATTGAAGAGTTTTTAGATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTAGTATTGTAAAGATTGCATTAAACAATTGTGATGAACTTCTAAGAATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGCCTACAAACAACTCCTAGTTTAATAGAAAGTTTTGACAATTCT
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGCTCTTTTGATAAAAAAGCTTTTAG
ACACTATAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAAAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTAGCATTTGATATTGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCAATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGAAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGATGAAGCCCATAGATTTGCTATAAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCTTTTTTA
CAAATAAGTGGAATAGGTGAAGCAAAAATTAAAAAACTTCTTTTGTATTTTGGAGAGTTTGAAAAGATAAAAAGTGCAAG
TTTAGATGAGCTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAGAAAGGAAGAGAATGGCT
AG

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.678

97.227

0.502

Multiple sequence alignment