Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FDK04_RS02020 Genome accession   NZ_CP039990
Coordinates   432818..434188 (+) Length   456 a.a.
NCBI ID   WP_004346639.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain T2101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427818..439188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDK04_RS02000 (FDK04_02075) - 428655..429221 (-) 567 WP_003117889.1 hypothetical protein -
  FDK04_RS02005 (FDK04_02080) rsmD 429224..429820 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FDK04_RS02010 (FDK04_02085) - 429820..431307 (-) 1488 WP_112302677.1 M16 family metallopeptidase -
  FDK04_RS02015 (FDK04_02090) - 431300..432697 (-) 1398 WP_112302678.1 M16 family metallopeptidase -
  FDK04_RS02020 (FDK04_02095) pilA 432818..434188 (+) 1371 WP_004346639.1 signal recognition particle-docking protein FtsY Machinery gene
  FDK04_RS02025 (FDK04_02100) ftsE 434185..434856 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  FDK04_RS02030 (FDK04_02105) ftsX 434856..435863 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  FDK04_RS02035 (FDK04_02110) rpoH 435977..436831 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  FDK04_RS02040 (FDK04_02115) - 436896..437501 (+) 606 WP_003084511.1 hypothetical protein -
  FDK04_RS02045 (FDK04_02120) mtgA 437506..438237 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FDK04_RS02050 (FDK04_02125) - 438274..438651 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  FDK04_RS02055 (FDK04_02130) thiS 438754..438954 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48550.96 Da        Isoelectric Point: 4.5033

>NTDB_id=318937 FDK04_RS02020 WP_004346639.1 432818..434188(+) (pilA) [Pseudomonas aeruginosa strain T2101]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSK
TSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQ
PLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASV
IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGL
ALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=318937 FDK04_RS02020 WP_004346639.1 432818..434188(+) (pilA) [Pseudomonas aeruginosa strain T2101]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGC
CGCTGGCCGCCGCGCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAG
ACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACAT
CGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGC
GCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAG
CCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCAT
CGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCG
TGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTG
ATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAA
GGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGC
TGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTT
GCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTA
TATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGG
AGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(251-450)

SRP54-type protein, helical bundle domain (SRP54_N)

(166-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.804

96.053

0.45

Multiple sequence alignment