Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   FCJ76_RS20790 Genome accession   NZ_CP039935
Coordinates   3998980..3999774 (-) Length   264 a.a.
NCBI ID   WP_046381476.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3993980..4004774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS20765 - 3995097..3995780 (-) 684 WP_038428106.1 response regulator transcription factor -
  FCJ76_RS20770 - 3995992..3996891 (+) 900 WP_046381473.1 PepSY domain-containing protein -
  FCJ76_RS20775 - 3997052..3997552 (+) 501 WP_046381474.1 PepSY domain-containing protein -
  FCJ76_RS20780 - 3997549..3997675 (-) 127 Protein_4012 hypothetical protein -
  FCJ76_RS20785 htrA 3997696..3998898 (-) 1203 WP_046381475.1 serine protease HtrC Regulator
  FCJ76_RS20790 vicX 3998980..3999774 (-) 795 WP_046381476.1 MBL fold metallo-hydrolase Regulator
  FCJ76_RS20795 walI 3999796..4000638 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  FCJ76_RS20800 walH 4000625..4001992 (-) 1368 WP_042976993.1 WalRK two-component regulatory system regulator WalH -
  FCJ76_RS20805 walK 4001982..4003817 (-) 1836 WP_024572714.1 cell wall metabolism sensor histidine kinase WalK -
  FCJ76_RS20810 walR 4003825..4004532 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29315.34 Da        Isoelectric Point: 5.8036

>NTDB_id=318828 FCJ76_RS20790 WP_046381476.1 3998980..3999774(-) (vicX) [Bacillus subtilis strain H19]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFMTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=318828 FCJ76_RS20790 WP_046381476.1 3998980..3999774(-) (vicX) [Bacillus subtilis strain H19]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AACGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTAAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCCGAACCGATGTTTTATGTGTTTC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGAATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTATGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53