Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   FCJ76_RS18910 Genome accession   NZ_CP039935
Coordinates   3630755..3631888 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain H19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3625755..3636888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS18870 ywnA 3625892..3626293 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  FCJ76_RS18875 ureC 3626426..3628135 (-) 1710 WP_137201075.1 urease subunit alpha -
  FCJ76_RS18880 ureB 3628132..3628506 (-) 375 WP_003227726.1 urease subunit beta -
  FCJ76_RS18885 ureA 3628503..3628820 (-) 318 WP_003227724.1 urease subunit gamma -
  FCJ76_RS21250 - 3629015..3629175 (-) 161 Protein_3635 hypothetical protein -
  FCJ76_RS21580 - 3629277..3629345 (-) 69 WP_144486809.1 hypothetical protein -
  FCJ76_RS18895 - 3629434..3629646 (-) 213 Protein_3637 urea ABC transporter substrate-binding protein -
  FCJ76_RS18900 csbD 3629859..3630047 (-) 189 WP_015251021.1 stress response protein CsbD -
  FCJ76_RS18905 - 3630120..3630599 (-) 480 WP_003244390.1 hypothetical protein -
  FCJ76_RS18910 rapC 3630755..3631888 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  FCJ76_RS18915 moaA 3632080..3633105 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  FCJ76_RS18920 fdhD 3633121..3633909 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  FCJ76_RS18925 - 3634155..3634316 (-) 162 WP_003227706.1 hypothetical protein -
  FCJ76_RS18930 ywmD 3634410..3635084 (-) 675 WP_003243553.1 VWA domain-containing protein -
  FCJ76_RS18935 - 3635137..3635277 (-) 141 WP_014478246.1 hypothetical protein -
  FCJ76_RS18940 ywmC 3635408..3636091 (-) 684 WP_124072645.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=318818 FCJ76_RS18910 WP_003227715.1 3630755..3631888(-) (rapC) [Bacillus subtilis strain H19]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=318818 FCJ76_RS18910 WP_003227715.1 3630755..3631888(-) (rapC) [Bacillus subtilis strain H19]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGTGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment