Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   FCJ76_RS03835 Genome accession   NZ_CP039935
Coordinates   735826..736953 (-) Length   375 a.a.
NCBI ID   WP_134983395.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 730826..741953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS03820 - 732249..734033 (+) 1785 WP_072175458.1 hypothetical protein -
  FCJ76_RS03825 - 734026..734964 (+) 939 WP_072175459.1 hypothetical protein -
  FCJ76_RS03830 - 735639..735836 (-) 198 WP_072175460.1 hypothetical protein -
  FCJ76_RS03835 rapC 735826..736953 (-) 1128 WP_134983395.1 Rap family tetratricopeptide repeat protein Regulator
  FCJ76_RS03840 - 737144..737447 (-) 304 Protein_693 hypothetical protein -
  FCJ76_RS03845 - 737532..737927 (-) 396 WP_042978001.1 immunity 22 family protein -
  FCJ76_RS03850 - 737940..739826 (-) 1887 WP_114523761.1 T7SS effector LXG polymorphic toxin -
  FCJ76_RS03855 - 739993..740331 (+) 339 WP_134983542.1 hypothetical protein -
  FCJ76_RS03860 - 740344..741264 (+) 921 WP_134983540.1 DUF5655 domain-containing protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44399.11 Da        Isoelectric Point: 6.8169

>NTDB_id=318708 FCJ76_RS03835 WP_134983395.1 735826..736953(-) (rapC) [Bacillus subtilis strain H19]
MGTISSPHVGMKINEWNRHIQKFNVTDAEMLKAEIERDIDIMEEDQDLLIYYQLIAFRHQLMIDYVIPSEGNQMELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMYEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEKSILQFKKSNFNNLTQAYHDLALIYFLQHKQDQAMDCFRKGVRFACKFDDNLFKIMFEGLQALFIKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=318708 FCJ76_RS03835 WP_134983395.1 735826..736953(-) (rapC) [Bacillus subtilis strain H19]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATGAAAATTAATGAGTGGAACCGGCATATTCAAAAGTTTAATGTGACAGA
TGCTGAAATGCTTAAAGCTGAGATCGAACGGGACATTGACATCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGCATTTCGCCATCAGCTTATGATTGACTATGTGATTCCATCTGAAGGAAACCAAATGGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAACTCGTTGAATACTACTATTACTTTTTTCAAGGGATGTATGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAACACCATTCCCTATATTTCAGATGAAATTG
AGCGGGCGGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCACGTATCCATGCACTATTCTTCT
CAGGCGTATAACATCTATAAAACACACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTGATCGCAGGAAACTA
CGACGATTTAGAAAGTCATGAAAAGGCGCTCCCTCACCTTGAACAGGCACTAAAAGGCGCACGGCTTCTTGAAAGCAAAA
ACAAGCGGATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGCGAATTGACGAAAGCAGCAAAA
TACATGGAGAAATCGATTCTCCAATTCAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGACCAGGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGACGATA
ATCTATTTAAAATTATGTTTGAAGGATTGCAGGCGCTGTTTATCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAGAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.953

100

0.424
  rapF Bacillus subtilis subsp. subtilis str. 168

39.05

100

0.395