Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D8Z76_RS18775 Genome accession   NZ_CP032789
Coordinates   3542577..3543206 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli strain NZRM4169     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3531499..3554380 3542577..3543206 within 0


Gene organization within MGE regions


Location: 3531499..3554380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8Z76_RS18715 (D8Z76_19095) - 3531499..3532518 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  D8Z76_RS18720 (D8Z76_19105) yccA 3532926..3533585 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  D8Z76_RS18725 (D8Z76_19110) tusE 3533676..3534005 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  D8Z76_RS18730 (D8Z76_19115) yccX 3534002..3534280 (-) 279 WP_000048252.1 acylphosphatase -
  D8Z76_RS18735 (D8Z76_19120) rlmI 3534375..3535565 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  D8Z76_RS18740 (D8Z76_19125) hspQ 3535623..3535940 (+) 318 WP_001295356.1 heat shock protein HspQ -
  D8Z76_RS18745 (D8Z76_19130) yccU 3535985..3536398 (-) 414 WP_000665217.1 CoA-binding protein -
  D8Z76_RS18750 (D8Z76_19135) yccT 3536571..3537233 (+) 663 WP_000847791.1 DUF2057 family protein -
  D8Z76_RS18755 (D8Z76_19140) mgsA 3537329..3537787 (+) 459 WP_000424181.1 methylglyoxal synthase -
  D8Z76_RS18760 (D8Z76_19145) helD 3537819..3539873 (-) 2055 WP_001301436.1 DNA helicase IV -
  D8Z76_RS18765 (D8Z76_19150) yccF 3539996..3540442 (+) 447 WP_001261230.1 YccF domain-containing protein -
  D8Z76_RS18770 (D8Z76_19155) yccS 3540452..3542614 (+) 2163 WP_151538988.1 YccS family putative transporter -
  D8Z76_RS18775 (D8Z76_19160) sxy/tfoX 3542577..3543206 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D8Z76_RS18780 (D8Z76_19165) sulA 3543425..3543934 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  D8Z76_RS18785 (D8Z76_19170) ompA 3544291..3545331 (+) 1041 WP_000750416.1 porin OmpA -
  D8Z76_RS18790 (D8Z76_19175) matP 3545407..3545859 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  D8Z76_RS18795 (D8Z76_19180) ycbZ 3546045..3547805 (+) 1761 WP_000156526.1 Lon protease family protein -
  D8Z76_RS18800 (D8Z76_19185) fabA 3547874..3548392 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  D8Z76_RS18805 (D8Z76_19190) rmf 3548462..3548629 (-) 168 WP_000828648.1 ribosome modulation factor -
  D8Z76_RS18810 (D8Z76_19195) pqiC 3548885..3549448 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  D8Z76_RS18815 (D8Z76_19200) pqiB 3549445..3551085 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  D8Z76_RS18820 (D8Z76_19205) pqiA 3551090..3552343 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  D8Z76_RS18825 (D8Z76_19210) uup 3552473..3554380 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=318654 D8Z76_RS18775 WP_000839159.1 3542577..3543206(-) (sxy/tfoX) [Escherichia coli strain NZRM4169]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=318654 D8Z76_RS18775 WP_000839159.1 3542577..3543206(-) (sxy/tfoX) [Escherichia coli strain NZRM4169]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment