Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D7D81_RS19265 Genome accession   NZ_CP032760
Coordinates   4010463..4011821 (-) Length   452 a.a.
NCBI ID   WP_125991772.1    Uniprot ID   -
Organism   Halocella sp. SP3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4005463..4016821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D81_RS19235 (D7D81_19295) - 4005636..4006424 (-) 789 WP_205739294.1 HutP family protein -
  D7D81_RS19240 (D7D81_19300) ispF 4006428..4006910 (-) 483 WP_125991762.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  D7D81_RS19245 (D7D81_19305) ispD 4006912..4007601 (-) 690 WP_286169980.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D7D81_RS19250 (D7D81_19310) - 4007606..4008715 (-) 1110 WP_125991766.1 PIN domain-containing protein -
  D7D81_RS19255 (D7D81_19315) - 4008787..4009290 (-) 504 WP_125991768.1 CarD family transcriptional regulator -
  D7D81_RS19260 (D7D81_19320) disA 4009383..4010459 (-) 1077 WP_125991770.1 DNA integrity scanning diadenylate cyclase DisA -
  D7D81_RS19265 (D7D81_19325) radA 4010463..4011821 (-) 1359 WP_125991772.1 DNA repair protein RadA Machinery gene
  D7D81_RS19270 (D7D81_19330) - 4011904..4014324 (-) 2421 WP_125991774.1 ATP-dependent Clp protease ATP-binding subunit -
  D7D81_RS19275 (D7D81_19335) - 4014337..4015386 (-) 1050 WP_125992402.1 protein arginine kinase -
  D7D81_RS19280 (D7D81_19340) - 4015389..4015901 (-) 513 WP_125991776.1 UvrB/UvrC motif-containing protein -
  D7D81_RS19285 (D7D81_19345) - 4015903..4016499 (-) 597 WP_286169983.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49117.48 Da        Isoelectric Point: 8.1159

>NTDB_id=318589 D7D81_RS19265 WP_125991772.1 4010463..4011821(-) (radA) [Halocella sp. SP3-1]
MARDRVDYTCEECGYKSSKWMGRCPNCDTWNSFVERRANKGSGKQVQLRVEPSPITKIEAGVRARSSSGIGELDRVLGGG
IVSGSLVLLGGAPGIGKSTLILQAASLFSKTNGLVLYVSGEESATQIKLRAERLKAINNSLYILAETEFDQISVALHKGN
YDLVIIDSIQTVYEPKLDSAPGSIPQVKEITNQLMKIAKTKNIPIFLIGHVTKEGNLAGPRVMEHLVDAVLQFEGDRNYS
YRILRAVKNRYGSTNEVGVFEMKGSGMEEVLNPSQLFLEERPDGVSGSVIAPVIEGSRPLLIEVQSLVSSSTFSAPQRLT
TGVDYKRVSILLAVLEKKAGFNFQTKDVHINITGGFKVDEPALDLGIISAIISSYQDQVIPDGLAVIGEVGLAGEVRAVS
QIEQRIKEAKKLGFNRIIIPQGNFKGLSFDPEVNIVGIVNIHQLLQHISKVG

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=318589 D7D81_RS19265 WP_125991772.1 4010463..4011821(-) (radA) [Halocella sp. SP3-1]
ATGGCGAGAGACAGGGTTGATTATACGTGTGAGGAATGCGGCTATAAGAGCTCCAAATGGATGGGACGTTGTCCGAATTG
TGATACCTGGAATTCGTTTGTTGAAAGGAGAGCTAATAAGGGCAGTGGGAAACAGGTTCAGCTTAGGGTTGAACCCAGTC
CAATTACAAAAATTGAAGCTGGAGTGCGTGCTCGTTCTTCCTCCGGGATTGGTGAATTAGACCGTGTCCTGGGGGGCGGG
ATTGTAAGTGGGTCTCTGGTTTTACTTGGAGGAGCCCCTGGTATTGGGAAATCAACCCTGATATTACAGGCGGCTTCCCT
TTTTAGTAAAACTAATGGCCTGGTTTTATATGTTTCAGGTGAGGAATCAGCTACCCAGATAAAACTGAGGGCAGAGAGAT
TAAAGGCCATTAATAATAGTTTATATATTCTGGCTGAAACCGAGTTTGACCAGATAAGTGTAGCCCTACATAAAGGTAAT
TATGACCTGGTAATAATTGATTCTATTCAGACGGTCTATGAACCAAAACTGGATAGTGCCCCTGGTAGTATTCCTCAGGT
TAAAGAGATTACTAATCAGCTTATGAAAATAGCCAAGACTAAAAATATACCAATCTTTTTAATTGGGCATGTTACTAAAG
AGGGCAACCTGGCAGGGCCGAGAGTTATGGAACACCTGGTTGATGCAGTACTCCAGTTTGAAGGTGACCGCAACTACTCT
TATCGTATCTTGCGAGCGGTTAAGAATAGGTATGGTTCAACTAATGAGGTTGGAGTTTTTGAAATGAAGGGTTCCGGTAT
GGAAGAAGTACTAAATCCTTCCCAATTATTTTTGGAGGAGAGACCTGACGGGGTATCTGGTTCTGTAATAGCACCTGTTA
TTGAAGGAAGCAGACCATTATTGATCGAGGTTCAGTCTCTGGTATCGTCTTCAACTTTTTCTGCGCCACAGCGTTTAACT
ACTGGTGTTGATTATAAAAGGGTATCTATTTTACTGGCTGTTCTGGAGAAAAAAGCCGGTTTTAACTTTCAGACTAAAGA
TGTCCATATTAATATTACAGGCGGGTTCAAGGTAGATGAGCCGGCTCTGGATTTAGGGATTATATCAGCTATAATTTCTA
GTTATCAGGATCAGGTTATCCCAGATGGACTGGCTGTTATAGGTGAGGTTGGATTAGCAGGTGAGGTCAGAGCAGTCAGC
CAGATAGAACAGCGTATTAAAGAAGCAAAAAAACTGGGATTTAATAGGATTATTATTCCACAGGGTAATTTTAAAGGGCT
TAGTTTTGACCCTGAAGTAAACATTGTGGGAATAGTAAATATACATCAATTATTACAACATATCTCTAAGGTGGGGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-215)

Subunit ChlI of Mg-chelatase (ChlI)

(337-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.539

100

0.527
  radA Streptococcus pneumoniae Rx1

49.558

100

0.496
  radA Streptococcus pneumoniae D39

49.558

100

0.496
  radA Streptococcus pneumoniae R6

49.558

100

0.496
  radA Streptococcus pneumoniae TIGR4

49.558

100

0.496
  radA Streptococcus mitis NCTC 12261

49.558

100

0.496
  radA Streptococcus mitis SK321

49.558

100

0.496

Multiple sequence alignment