Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CFBP7129_RS00930 Genome accession   NZ_CP039922
Coordinates   183616..183981 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain CFBP7129     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 178616..188981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP7129_RS00915 (CFBP7129_00915) - 180831..181208 (-) 378 WP_127756383.1 hypothetical protein -
  CFBP7129_RS00920 (CFBP7129_00920) - 181725..183320 (+) 1596 WP_233284721.1 globin-coupled sensor protein -
  CFBP7129_RS00925 (CFBP7129_00925) - 183320..183619 (+) 300 WP_137002883.1 STAS domain-containing protein -
  CFBP7129_RS00930 (CFBP7129_00930) scnR 183616..183981 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  CFBP7129_RS00935 (CFBP7129_00935) - 183998..186265 (+) 2268 WP_127756381.1 chemotaxis protein CheA -
  CFBP7129_RS00940 (CFBP7129_00940) cheR 186279..187187 (+) 909 WP_137002884.1 protein-glutamate O-methyltransferase CheR -
  CFBP7129_RS00945 (CFBP7129_00945) cheB 187184..188239 (+) 1056 WP_003522763.1 protein-glutamate O-methylesterase CheB -
  CFBP7129_RS00950 (CFBP7129_00950) cheY2 188239..188628 (+) 390 WP_003503467.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=318577 CFBP7129_RS00930 WP_003493773.1 183616..183981(+) (scnR) [Agrobacterium tumefaciens strain CFBP7129]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=318577 CFBP7129_RS00930 WP_003493773.1 183616..183981(+) (scnR) [Agrobacterium tumefaciens strain CFBP7129]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCCGGACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAAACCATTCAGGCTGAAGACGGCATTGAGGGCCTCGAAGTGCTCGAGCAGAGCAACCCCGATGTTATCGTGACGGACA
TCAACATGCCCCGTCTCGACGGTTTCGGCTTCATCGAGGGTGTACGGCGCAACGAGAAATACCGGGCTATCCCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACGGGCTGGATCGTCAAGCCGTT
CGACCCTGCGAAACTCATCGATGCCATTGAACGCGTAACCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364