Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CFBP6624_RS13510 Genome accession   NZ_CP039907
Coordinates   2691150..2692958 (+) Length   602 a.a.
NCBI ID   WP_137085601.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP6624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2686150..2697958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6624_RS13510 (CFBP6624_13510) recQ 2691150..2692958 (+) 1809 WP_137085601.1 DNA helicase RecQ Machinery gene
  CFBP6624_RS13515 (CFBP6624_13515) - 2693016..2694248 (-) 1233 WP_046799092.1 ROK family transcriptional regulator -
  CFBP6624_RS13520 (CFBP6624_13520) - 2694514..2695536 (+) 1023 WP_046799093.1 sugar ABC transporter substrate-binding protein -
  CFBP6624_RS13525 (CFBP6624_13525) - 2695763..2696845 (+) 1083 WP_137085603.1 ABC transporter permease -
  CFBP6624_RS13530 (CFBP6624_13530) - 2696845..2697627 (+) 783 WP_046799094.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67083.73 Da        Isoelectric Point: 6.3847

>NTDB_id=318570 CFBP6624_RS13510 WP_137085601.1 2691150..2692958(+) (recQ) [Agrobacterium tumefaciens strain CFBP6624]
MTADPLQILKTVYGYDTFRGRQADIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARSGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSLEERRTLWREMRAGNVDILYAAPETLLKPDVLDALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDML
IERFPDTPRMALTATADEPTRTEILGHLAIDEGDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLKGRENESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKTAREANQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDSLLGLAETAGCRRQVLLSYFGDRCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDQITTYGIGKEHDNRSWRAILRQLVALRLIEVDLSG
HGGLSISEEGRRFLREKPALMLRIPSAPRSARQQTPRNAASTALPEADRSLFEVLRAKRMEIARAQNVPPYVIFHDKTLI
ELAAAKPASAREMAQIPGVGDTKLERYGPAFLEAIMQHATGA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=318570 CFBP6624_RS13510 WP_137085601.1 2691150..2692958(+) (recQ) [Agrobacterium tumefaciens strain CFBP6624]
GTGACCGCCGACCCGTTGCAGATACTCAAGACCGTTTACGGCTATGATACGTTCCGCGGACGCCAGGCCGACATCATCCG
ACATGTCATGGCGGGAAACAATGCCTTCGTCCTCATGCCGACGGGCGGAGGAAAGTCGCTTTGTTACCAGATCCCGGCGC
TTGCCCGTAGCGGCATGGGGCTGATCGTTTCACCGCTAATCGCATTGATGGTGGACCAGGTCGCGGCACTTCGTCAGGCG
GGTGTGCGGGCCGAGGCCCTCAATTCCGATCTTTCTCTGGAAGAGCGTCGAACGCTCTGGCGGGAGATGCGAGCCGGCAA
CGTCGACATTCTTTATGCCGCGCCGGAAACCCTTCTCAAGCCGGATGTGCTGGACGCGCTTCAATCCATTGACCTGTCGC
TGATCGCGGTTGATGAAGCTCATTGCCTGTCGCAATGGGGGCATGATTTCCGACCGCCTTACCGTCAGCTCGATATGCTG
ATCGAGCGTTTTCCCGATACGCCACGCATGGCGCTGACGGCGACCGCCGACGAGCCTACCCGTACCGAAATTCTCGGTCA
TCTCGCGATCGATGAGGGTGACGCGTTTATTGCCGGATTCGACCGCCCCAACATCCGCTATGCGATCATGGAAAAGGACA
ATCCCCGCGCCCAGCTGAAACGCTTTCTCAAGGGCCGGGAGAATGAGAGCGGCATCGTTTATTGCCTGTCGAAACGCAAG
GTTGATGAGACGGCGGCATGGTTGCGGGAGGAGGGGCGAGACGCGCTGCCCTATCACGCGGGTATGGACAAGACCGCCCG
CGAGGCAAACCAGACCCGTTTTCAGCACGGTGAGGCGGTGATTATCGTCGCCACCGTCGCTTTCGGCATGGGCATCGACA
AGCCGGATGTGCGCTTCGTGGTTCATATCGATCTGCCGGGCAGCATCGAGGCCTATTATCAGGAGACTGGCCGTGCCGGT
CGTGATGGTCTGCCGTCAGACGTGCTTATGCTTTACGGTTATGAAGACATCGCCTTGCGCAACCGCTTCATTGAAGAATC
GGATGCCGCGGACCAGCGCAAATATATGGAGCGCCAGAAGCTTGATTCCCTGCTCGGTCTTGCGGAAACAGCGGGCTGCC
GCCGTCAGGTCCTGCTCTCCTACTTCGGTGATCGATGCGAGCCGTGCGGTAACTGTGATACCTGTGCGGAGCCGCCGGAC
CTGTTTGACGGTGCGATAGCCGCGCAAAAGCTGCTCTCCTGCATTTACCGCACCGGGGAACGTTTCGGCCAGGCCTATGT
CATTCGCGTATTGCTCGGCGTCGAGGACGAGCGGATTTCCCGTTTCGGGCACGATCAGATCACCACTTACGGGATCGGCA
AAGAGCATGATAATCGCTCCTGGCGCGCCATTTTGCGGCAGCTGGTTGCACTGCGCCTGATCGAAGTGGATCTGTCCGGA
CATGGCGGATTGTCGATTTCCGAAGAAGGGAGGCGGTTCCTGCGCGAAAAGCCAGCCCTGATGCTGAGAATACCATCCGC
GCCCCGTTCGGCCCGGCAGCAGACGCCGCGGAATGCCGCATCGACAGCTTTGCCGGAGGCGGATCGTAGTCTCTTCGAGG
TGCTGCGTGCAAAGCGTATGGAAATTGCCCGTGCGCAGAACGTCCCGCCTTATGTGATTTTTCACGATAAGACCCTGATC
GAACTGGCTGCTGCGAAACCGGCCTCGGCGAGGGAGATGGCGCAGATCCCCGGCGTCGGAGACACCAAGCTGGAGCGCTA
CGGCCCCGCCTTTCTTGAGGCGATCATGCAGCACGCAACTGGCGCGTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

HRDC domain (HRDC)

(530-595)

DEAD/DEAH box helicase (DEAD)

(22-177)

RQC domain (RQC)

(398-509)

Helicase conserved C-terminal domain (Helicase_C)

(219-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.584

99.003

0.372