Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CFBP6624_RS11715 Genome accession   NZ_CP039907
Coordinates   2299904..2300122 (-) Length   72 a.a.
NCBI ID   WP_233285198.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP6624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2294904..2305122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6624_RS11690 (CFBP6624_11690) - 2295153..2295533 (-) 381 WP_137085287.1 RidA family protein -
  CFBP6624_RS11695 (CFBP6624_11695) - 2295613..2296557 (-) 945 WP_137085289.1 pirin family protein -
  CFBP6624_RS11700 (CFBP6624_11700) - 2297208..2297765 (-) 558 WP_046802178.1 TetR/AcrR family transcriptional regulator -
  CFBP6624_RS11705 (CFBP6624_11705) - 2297938..2298876 (+) 939 WP_137085293.1 alpha/beta fold hydrolase -
  CFBP6624_RS11710 (CFBP6624_11710) - 2298966..2299715 (+) 750 WP_052818322.1 SDR family oxidoreductase -
  CFBP6624_RS11715 (CFBP6624_11715) recQ 2299904..2300122 (-) 219 WP_233285198.1 DEAD/DEAH box helicase Machinery gene

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7709.90 Da        Isoelectric Point: 10.1044

>NTDB_id=318565 CFBP6624_RS11715 WP_233285198.1 2299904..2300122(-) (recQ) [Agrobacterium tumefaciens strain CFBP6624]
MTADPLQILKTVYGYDTFRGRQADIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARTATIVGAKSPPQNTNS

Nucleotide


Download         Length: 219 bp        

>NTDB_id=318565 CFBP6624_RS11715 WP_233285198.1 2299904..2300122(-) (recQ) [Agrobacterium tumefaciens strain CFBP6624]
GTGACCGCCGACCCGTTGCAGATACTCAAGACCGTTTACGGCTATGATACGTTCCGCGGACGCCAGGCCGACATCATCCG
ACATGTCATGGCGGGAAACAATGCCTTCGTCCTCATGCCGACGGGCGGAGGAAAGTCGCTTTGTTACCAGATCCCGGCGC
TTGCCCGCACAGCTACGATCGTCGGTGCTAAATCCCCGCCGCAAAACACAAACTCCTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(22-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

49.091

76.389

0.375

Multiple sequence alignment