Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CFBP6624_RS00915 Genome accession   NZ_CP039907
Coordinates   182114..182479 (+) Length   121 a.a.
NCBI ID   WP_004439870.1    Uniprot ID   A0A1S7QB18
Organism   Agrobacterium tumefaciens strain CFBP6624     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 177114..187479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6624_RS00900 (CFBP6624_00900) - 179340..179705 (-) 366 WP_046800550.1 hypothetical protein -
  CFBP6624_RS00905 (CFBP6624_00905) - 180223..181818 (+) 1596 WP_225341576.1 globin-coupled sensor protein -
  CFBP6624_RS00910 (CFBP6624_00910) - 181818..182117 (+) 300 WP_046800552.1 STAS domain-containing protein -
  CFBP6624_RS00915 (CFBP6624_00915) scnR 182114..182479 (+) 366 WP_004439870.1 chemotaxis response regulator CheY1 Regulator
  CFBP6624_RS00920 (CFBP6624_00920) - 182496..184763 (+) 2268 WP_137083458.1 chemotaxis protein CheA -
  CFBP6624_RS00925 (CFBP6624_00925) cheR 184777..185685 (+) 909 WP_046800729.1 protein-glutamate O-methyltransferase CheR -
  CFBP6624_RS00930 (CFBP6624_00930) cheB 185682..186737 (+) 1056 WP_046800554.1 protein-glutamate O-methylesterase CheB -
  CFBP6624_RS00935 (CFBP6624_00935) cheY2 186737..187126 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13468.45 Da        Isoelectric Point: 4.9534

>NTDB_id=318541 CFBP6624_RS00915 WP_004439870.1 182114..182479(+) (scnR) [Agrobacterium tumefaciens strain CFBP6624]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=318541 CFBP6624_RS00915 WP_004439870.1 182114..182479(+) (scnR) [Agrobacterium tumefaciens strain CFBP6624]
GTGAAGAAAAAAGTTCTCACCGTGGATGATTCCCGGACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
TGAGACCATTCAGGCCGAAGATGGCGTTGAAGGCCTCGAGGTGCTGGAACAGAGCAACCCCGATGTCATCGTGACTGACA
TCAACATGCCCCGTCTTGATGGTTTCGGCTTTATCGAAGGTGTGCGCCGCAACGAGAAATATCGGGCTATCCCGATCCTC
GTTCTGACGACTGAAAGCGATGCAGAAAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATTGTCAAGCCGTT
CGACCCTGCAAAACTCATCGATGCCATTGAACGCGTAACCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7QB18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364