Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CFBP6623_RS13935 Genome accession   NZ_CP039903
Coordinates   2797831..2799639 (+) Length   602 a.a.
NCBI ID   WP_046799091.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP6623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2792831..2804639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6623_RS13935 (CFBP6623_13935) recQ 2797831..2799639 (+) 1809 WP_046799091.1 DNA helicase RecQ Machinery gene
  CFBP6623_RS13940 (CFBP6623_13940) - 2799697..2800929 (-) 1233 WP_046799092.1 ROK family transcriptional regulator -
  CFBP6623_RS13945 (CFBP6623_13945) - 2801195..2802217 (+) 1023 WP_046799093.1 sugar ABC transporter substrate-binding protein -
  CFBP6623_RS13950 (CFBP6623_13950) - 2802442..2803524 (+) 1083 WP_080842430.1 ABC transporter permease -
  CFBP6623_RS13955 (CFBP6623_13955) - 2803524..2804306 (+) 783 WP_046799094.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67127.74 Da        Isoelectric Point: 6.1255

>NTDB_id=318534 CFBP6623_RS13935 WP_046799091.1 2797831..2799639(+) (recQ) [Agrobacterium tumefaciens strain CFBP6623]
MTADPLQILKTVYGYDTFRGRQGDIIQHVMAGNNAFVLMPTGGGKSLCYQIPALARSGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSLEERRTLWREMRAGNVDILYAAPETLLKPDVLDALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDML
IERFPDTPRMALTATADEPTRTEILGHLAIDEDDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLKGRENESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKTAREANQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDVADQRKYMERQKLDSLLGLAETAGCRRQVLLSYFGDRCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDQITTYGIGKEHDNRSWRAILRQLVALRLIEVDLSG
HGGLSISEEGRRFLREKPALMLRIPSAPRSARQQTPRNAASTALPEADRSLFEVLRAKRMEIARAQNVPPYVIFHDKTLI
ELAAAKPASAREMAQIPGVGDTKLERYGPAFLEAIMQHATGA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=318534 CFBP6623_RS13935 WP_046799091.1 2797831..2799639(+) (recQ) [Agrobacterium tumefaciens strain CFBP6623]
GTGACCGCCGACCCGTTGCAGATACTCAAGACCGTTTACGGCTATGACACGTTCCGCGGACGCCAGGGCGATATCATCCA
GCATGTCATGGCGGGAAACAATGCCTTCGTCCTCATGCCGACGGGCGGAGGAAAGTCGCTTTGTTACCAGATCCCGGCGC
TTGCCCGTAGCGGCATGGGGCTGATCGTTTCACCGCTGATCGCATTGATGGTGGACCAGGTCGCGGCACTTCGTCAGGCG
GGTGTGCGGGCCGAGGCCCTGAATTCCGATCTTTCTCTGGAAGAGCGTCGAACGCTCTGGCGGGAGATGCGGGCCGGCAA
TGTCGACATTCTTTATGCCGCGCCGGAAACCCTTCTCAAGCCGGATGTGCTGGACGCGCTTCAATCCATTGACCTGTCAC
TGATCGCGGTTGATGAAGCTCATTGCCTGTCGCAATGGGGGCATGATTTCCGACCGCCTTACCGTCAGCTCGATATGCTG
ATCGAGCGTTTTCCCGATACTCCACGCATGGCGCTGACGGCGACCGCCGACGAGCCTACCCGTACCGAAATTCTCGGTCA
TCTCGCGATTGATGAGGATGACGCGTTCATTGCCGGATTCGACCGCCCCAACATCCGCTATGCGATCATGGAAAAGGACA
ATCCCCGCGCCCAGCTGAAACGCTTTCTCAAGGGCCGGGAGAATGAGAGCGGCATCGTTTATTGCCTGTCGAAACGCAAG
GTCGATGAGACGGCGGCGTGGTTGCGGGAAGAGGGGCGAGACGCGCTGCCCTATCACGCGGGTATGGACAAGACCGCCCG
CGAGGCAAACCAGACCCGTTTTCAGCACGGTGAGGCGGTGATTATCGTCGCCACCGTCGCTTTCGGCATGGGCATCGACA
AGCCGGATGTGCGCTTCGTGGTTCATATCGATCTGCCGGGCAGCATCGAGGCCTATTATCAGGAGACCGGCCGTGCCGGT
CGTGATGGTCTGCCGTCAGACGTGCTTATGCTTTACGGTTATGAAGACATCGCCTTGCGCAACCGCTTCATTGAAGAATC
GGATGTCGCGGACCAGCGCAAATATATGGAGCGCCAGAAGCTTGATTCCCTGCTCGGTCTTGCGGAAACAGCGGGCTGCC
GCCGTCAGGTCCTGCTCTCCTACTTCGGTGATCGATGCGAGCCGTGCGGTAACTGCGATACCTGTGCGGAGCCGCCGGAC
CTGTTTGACGGCGCGATAGCCGCGCAAAAGCTGCTCTCCTGCATTTACCGCACCGGGGAACGTTTCGGCCAGGCCTATGT
CATTCGCGTTTTGCTCGGCGTCGAGGACGAGCGTATTTCCCGTTTCGGGCACGATCAGATCACCACTTACGGGATCGGCA
AAGAGCATGACAATCGCTCCTGGCGCGCCATTTTGCGGCAGCTGGTTGCACTGCGCCTGATCGAAGTGGATCTGTCCGGA
CATGGCGGATTGTCGATTTCCGAAGAAGGGAGGCGGTTCCTGCGCGAAAAGCCAGCCCTGATGCTGAGAATACCATCCGC
GCCCCGTTCGGCCCGGCAGCAGACGCCGCGGAATGCCGCATCGACAGCTTTGCCGGAGGCAGATCGTAGTCTCTTCGAGG
TGCTGCGTGCAAAGCGTATGGAAATTGCCCGTGCGCAGAACGTCCCGCCTTATGTGATTTTTCACGATAAGACCCTGATC
GAACTGGCTGCTGCGAAACCGGCCTCGGCGAGGGAGATGGCGCAGATCCCCGGCGTCGGAGACACCAAGCTGGAGCGCTA
CGGCCCCGCCTTTCTTGAGGCGATCATGCAGCACGCAACTGGCGCGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(22-177)

HRDC domain (HRDC)

(530-595)

RQC domain (RQC)

(398-509)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

Helicase conserved C-terminal domain (Helicase_C)

(219-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.416

99.003

0.37