Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LPA65_RS08895 Genome accession   NZ_CP032751
Coordinates   1872099..1873910 (-) Length   603 a.a.
NCBI ID   WP_057717531.1    Uniprot ID   -
Organism   Lactiplantibacillus argentoratensis strain DSM 16365     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1867099..1878910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA65_RS08870 (LPA65_08870) - 1867797..1868600 (-) 804 WP_054397414.1 NAD kinase -
  LPA65_RS08875 (LPA65_08875) - 1868597..1869259 (-) 663 WP_054397417.1 GTP pyrophosphokinase -
  LPA65_RS08880 (LPA65_08880) - 1869550..1870185 (+) 636 WP_054397419.1 DsbA family protein -
  LPA65_RS08885 (LPA65_08885) - 1870292..1871170 (-) 879 WP_262346024.1 IS3 family transposase -
  LPA65_RS08890 (LPA65_08890) - 1871167..1871892 (-) 726 WP_121054791.1 helix-turn-helix domain-containing protein -
  LPA65_RS08895 (LPA65_08895) pepF 1872099..1873910 (-) 1812 WP_057717531.1 oligoendopeptidase F Regulator
  LPA65_RS08900 (LPA65_08900) - 1873988..1875073 (-) 1086 WP_057717530.1 competence protein CoiA -
  LPA65_RS08905 (LPA65_08905) - 1875246..1875974 (-) 729 WP_057717529.1 adaptor protein MecA -
  LPA65_RS08910 (LPA65_08910) spxA 1876110..1876508 (-) 399 WP_011101690.1 transcriptional regulator SpxA -
  LPA65_RS08915 (LPA65_08915) - 1876795..1877538 (-) 744 WP_057717528.1 MBL fold metallo-hydrolase -
  LPA65_RS08920 (LPA65_08920) - 1877679..1878179 (+) 501 WP_054397432.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67721.85 Da        Isoelectric Point: 5.1458

>NTDB_id=318527 LPA65_RS08895 WP_057717531.1 1872099..1873910(-) (pepF) [Lactiplantibacillus argentoratensis strain DSM 16365]
MVATKQLPTRSAVPEELTWDLTPIYADQAAYEADVAQVKAAIPTVSALKEDFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILQLTPGELDTYLDENVDLRDYRHLLDTVRLQKGHVLSENEEA
LLAGAGDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLASTLAS
QVKVHNFVATAHHYPDARTAALAANQIPTTVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYT
YQQAQSTALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDQEGQ
ALTADRLSKHYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTKQPGAVDDYLGYLKAG
SSAFPIDVMHRAGVDMTKSDYLDAAFKVFEERLDEFEQLVTRK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=318527 LPA65_RS08895 WP_057717531.1 1872099..1873910(-) (pepF) [Lactiplantibacillus argentoratensis strain DSM 16365]
ATGGTAGCAACCAAACAATTGCCGACCCGGTCGGCTGTTCCTGAAGAATTGACATGGGATTTGACACCGATTTATGCTGA
TCAGGCTGCATATGAGGCGGATGTCGCGCAAGTTAAAGCGGCAATCCCCACCGTTAGTGCGCTCAAAGAAGATTTTACAA
GCTCGGCCGACACGGTGTTGGCAGGCATTCAGGCCGTCTTAGCTTTGTATCGTCGCCTAGAGAAGGTGGCGGTCTATGCG
AGTTTGAAAAGTGATCAGGATACTGGAAATAGTACCAACGCTGCTTTGGATGACCAAGCTAGTAGTTTAACCGCCAAAGT
GTCCGCTGCAACTGCCTGGTTTGAACCGGCAATCTTACAGTTAACGCCGGGCGAATTAGATACGTATCTTGATGAAAACG
TCGATTTACGTGATTACCGGCACTTGTTGGATACGGTTCGCTTACAAAAGGGCCACGTTCTATCTGAGAACGAAGAAGCC
TTACTTGCCGGAGCTGGCGATATTTTTGGGGCTTCCGCGAAGACTTTTGGTGTGTTGAATAACGCTGACTTTCAATTTCC
GACGGTGAAGGATGACGACGGTAACCCTGTCAAATTGTCGCAAGGCATTTATGGCGTGCTGCTTGAGTCCGTTCATCCGG
CCGTTCGGCGTGAGGCATTTGAGGCGCTATATAAAGTGTATGGGCAATTTCGACGGACGCTCGCGTCGACGTTAGCTAGC
CAAGTCAAGGTGCATAATTTCGTCGCTACGGCGCACCACTATCCGGATGCACGAACGGCGGCACTTGCGGCCAATCAGAT
TCCGACAACGGTCTATGATTCCTTAGTCACGTCTGTTGACAAGCACTTAGATCTGTTACACCGTTACGTTGCCTTACGAA
AGCAGTTGCTCGGTGTTGATCAGTTGCATATGTATGATATGTATACGCCTTTGGCACCTAAGCCGACGACCAATTATACC
TATCAACAGGCCCAATCGACTGCCTTACAAGCCCTCAAAATTTTGGGACCTGATTATCTAAAACACGTCAAAACAGCGTT
TGCTTCGCGGTGGATCGATGTGGTGGAAAACCAAGGCAAACGTAGCGGGGCGTATTCGTCTGGAATGTACGATACTGCGC
CGTATATGCTGTTGAACTGGCAGGATAATATTGATAATTTATACACGTTGGTGCACGAAATGGGGCACAGTATGCATTCA
TACTTCACGACGCATCATCAACCTTATCAATATGGTGATTATTCAATTTTTGTGGCGGAAATTGCGTCAACGACTAATGA
AAACTTATTGACGAACTATTTCTTAGCAACTGAGCAAGATCCAAAAATGCGAGCGTACGTCTTGAACTACTACTTGGATG
GCTTTAAGGGCACTGTTTTCCGGCAGACGCAATTTGCTGAGTTCGAACAGTGGCTTCATGAGCAAGATCAAGAAGGTCAG
GCCTTGACTGCGGATCGCTTATCAAAACATTATTTACAGTTGAACCAACGTTACTATGGTGATGCCGTCGTCAGTGATCC
ACAAATTGCTGATGAATGGTCTCGGATCCCACACTTCTATTACAATTATTATGTTTATCAATACGCTACGGGCTTCGCAG
CGGCATCCACGCTAGCCGACCGTATCAGTACGAAACAGCCTGGTGCCGTTGATGATTACCTCGGCTATTTGAAAGCCGGT
TCATCAGCGTTCCCAATCGATGTCATGCATCGCGCGGGGGTTGACATGACTAAGTCAGATTATTTGGACGCAGCCTTTAA
GGTATTTGAAGAACGGCTAGACGAGTTCGAACAACTGGTCACCCGAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(118-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.189

98.507

0.514

Multiple sequence alignment