Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CFBP6623_RS05495 Genome accession   NZ_CP039903
Coordinates   1100673..1101395 (-) Length   240 a.a.
NCBI ID   WP_046800224.1    Uniprot ID   A0A1S7PHX8
Organism   Agrobacterium tumefaciens strain CFBP6623     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1095673..1106395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6623_RS05485 (CFBP6623_05485) - 1097128..1099563 (+) 2436 WP_046800368.1 ComEC/Rec2 family competence protein -
  CFBP6623_RS05490 (CFBP6623_05490) - 1099583..1100260 (-) 678 WP_046800225.1 glutathione S-transferase family protein -
  CFBP6623_RS05495 (CFBP6623_05495) dinR/lexA 1100673..1101395 (-) 723 WP_046800224.1 transcriptional repressor LexA Regulator
  CFBP6623_RS05500 (CFBP6623_05500) - 1101608..1102489 (+) 882 WP_046800367.1 VOC family protein -
  CFBP6623_RS05505 (CFBP6623_05505) kdsA 1102489..1103334 (+) 846 WP_046800223.1 3-deoxy-8-phosphooctulonate synthase -
  CFBP6623_RS05510 (CFBP6623_05510) eno 1103470..1104744 (+) 1275 WP_046800222.1 phosphopyruvate hydratase -
  CFBP6623_RS05515 (CFBP6623_05515) - 1105049..1105366 (+) 318 WP_003512872.1 septum formation initiator family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25950.88 Da        Isoelectric Point: 9.3311

>NTDB_id=318516 CFBP6623_RS05495 WP_046800224.1 1100673..1101395(-) (dinR/lexA) [Agrobacterium tumefaciens strain CFBP6623]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYAPGARPQ
RGFSPSVIEGSLGKPKAPEPPPAPKAPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGSGEHYALEVKGDS
MIEAGIFDGDTVIIRNSNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=318516 CFBP6623_RS05495 WP_046800224.1 1100673..1101395(-) (dinR/lexA) [Agrobacterium tumefaciens strain CFBP6623]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCCAAATCCGGCATCCACCGGCTGATTACCGCCCTCGAAGAGCGCGGCTTTA
TTCGCCGGCTACCTAACAGGGCGCGGGCGCTGGAAGTCATCAAGCTGCCGGAGGCCTATGCGCCGGGTGCCAGGCCGCAG
CGCGGCTTTTCTCCAAGCGTCATCGAAGGCAGCCTCGGAAAGCCGAAGGCGCCAGAACCCCCACCGGCGCCCAAGGCGCC
CGCCAACGATCTCGGCGGCGCGGTCACCGTTCCGGTCATGGGTCGCATCGCCGCCGGCGTGCCGATTTCCGCCATTCAGA
ACAATACGCATGATGTTGCCGTGCCGGTTGACATGCTGGGTTCGGGTGAACATTACGCGCTCGAAGTTAAGGGCGATTCG
ATGATCGAGGCCGGGATTTTCGACGGTGATACCGTCATCATCCGCAACAGCAATACCGCCAATCCGGGCGATATCGTCGT
GGCATTGGTGGATGACGAGGAAGCGACGCTGAAGCGTTTCCGCCGCAAGGGCGCTTCCATCGCGCTGGAAGCGGCCAACC
CCGCTTATGAAACCCGTATCTTCGGGCCTGATCGGGTAAAAATTCAGGGCAAGCTGGTCGGACTTATACGCCGTTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7PHX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363