Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CFBP5877_RS13250 Genome accession   NZ_CP039897
Coordinates   2630255..2632063 (+) Length   602 a.a.
NCBI ID   WP_080826951.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5877     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2625255..2637063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5877_RS13230 (CFBP5877_13230) - 2625444..2626526 (-) 1083 WP_080826955.1 amino acid ABC transporter permease -
  CFBP5877_RS13235 (CFBP5877_13235) - 2626530..2627690 (-) 1161 WP_080826954.1 ABC transporter permease subunit -
  CFBP5877_RS13240 (CFBP5877_13240) - 2627916..2628944 (-) 1029 WP_199445967.1 amino acid ABC transporter substrate-binding protein -
  CFBP5877_RS13245 (CFBP5877_13245) - 2629343..2630014 (+) 672 WP_233284155.1 LysR substrate-binding domain-containing protein -
  CFBP5877_RS13250 (CFBP5877_13250) recQ 2630255..2632063 (+) 1809 WP_080826951.1 DNA helicase RecQ Machinery gene
  CFBP5877_RS13255 (CFBP5877_13255) - 2632112..2633344 (-) 1233 WP_080826950.1 ROK family transcriptional regulator -
  CFBP5877_RS13260 (CFBP5877_13260) - 2633609..2634631 (+) 1023 WP_080826949.1 sugar ABC transporter substrate-binding protein -
  CFBP5877_RS13265 (CFBP5877_13265) - 2634855..2635937 (+) 1083 WP_080826948.1 ABC transporter permease -
  CFBP5877_RS13270 (CFBP5877_13270) - 2635937..2636719 (+) 783 WP_080826947.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 66853.54 Da        Isoelectric Point: 6.5684

>NTDB_id=318499 CFBP5877_RS13250 WP_080826951.1 2630255..2632063(+) (recQ) [Agrobacterium tumefaciens strain CFBP5877]
MIADPLQILKTVYGYDAFRGRQTDIIQHVMAGKNAFVLMPTGGGKSLCYQIPALARKGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWQAMRAGHVDILYAAPETLLKPEVLEALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDML
IERFPNVPRMALTATADEPTRNEILGHLAIDESDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLNGRETESGIVYCLSKRK
VDETAAWLQEEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETAGCRRQVLLSYFGDRCEPCGNCDTCAAPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVISVLLGAQDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRLIEVDLSG
HGGLSISEDGRRFLREKPSLMLRIPSAPRAARREAPRNSTSTALPAADRGLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAAARPASAKEMAQIAGVGETKLERYGPAFLDTIIQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=318499 CFBP5877_RS13250 WP_080826951.1 2630255..2632063(+) (recQ) [Agrobacterium tumefaciens strain CFBP5877]
GTGATCGCCGACCCTTTGCAAATTCTCAAGACTGTTTATGGCTACGATGCATTTCGCGGACGGCAAACTGACATCATTCA
GCATGTCATGGCTGGAAAAAACGCCTTCGTGCTGATGCCGACCGGCGGCGGAAAGTCGCTGTGTTATCAGATCCCGGCGC
TCGCCCGCAAAGGCATGGGGCTGATCGTCTCGCCGCTGATCGCGCTCATGGTCGATCAGGTGGCGGCGCTGCGTCAGGCG
GGCGTGCGGGCTGAGGCGCTCAACTCGGACCTTTCTCCCGAAGAACGACGCGCGCTCTGGCAGGCGATGCGCGCCGGTCA
TGTCGATATTCTTTATGCCGCGCCGGAAACTCTCCTCAAACCGGAGGTTCTCGAGGCGCTTCAATCCATCGATCTGTCGC
TGATCGCGGTCGATGAGGCCCATTGCCTGTCGCAATGGGGGCATGATTTCCGGCCGCCCTATCGCCAGCTCGATATGTTG
ATCGAGCGTTTTCCAAATGTACCGAGGATGGCGCTGACGGCGACCGCTGACGAACCCACCCGTAACGAGATTCTCGGCCA
TCTCGCTATCGATGAAAGTGATGCCTTCATCGCCGGCTTCGACCGCCCCAATATCCGCTATGCGATCATGGAGAAGGACA
ATCCCCGCGCCCAGCTGAAACGTTTTCTCAATGGCCGGGAGACCGAAAGCGGCATCGTTTATTGCCTGTCGAAACGCAAG
GTGGATGAAACGGCGGCATGGCTGCAGGAAGAGGGGCGTGACGCGCTGCCCTATCACGCCGGCATGGACAAGGCCGCCCG
CGAGGAAAACCAGACCCGCTTCCAGCACGGGGAAGCAGTCATCATCGTAGCGACGGTTGCCTTCGGTATGGGCATCGACA
AGCCGGATGTGCGTTTCGTCGTTCATATCGATCTACCCGGAAGCATCGAGGCCTATTATCAGGAAACCGGCCGAGCCGGG
CGCGATGGCCTGCCGTCTGACGTGCTGATGCTCTATGGCTACGAAGATATTGCCCTGCGCAACCGCTTCATCGAGGAGTC
GGATGCTGCGGACCAGCGCAAATATATGGAACGACAGAAGCTCGATGCGCTGCTTGGCCTTGCGGAAACCGCGGGATGCC
GGAGGCAGGTTCTGCTCTCCTATTTCGGTGACCGGTGCGAGCCCTGTGGCAACTGTGATACGTGCGCAGCGCCGCCTGAT
CTGTTCGATGGGGCCATCGCCGCACAGAAGCTGCTTTCCTGCATCTACCGCACGGGAGAACGTTTCGGGCAGGCCTATGT
CATCAGCGTATTGCTGGGCGCGCAGGATGAGCGGATTTCCCGCTTCGGGCACGATCGCATCACCACTTACGGGATCGGCA
AGGAACACGACAATCGCACCTGGCGGGCCATTTTGCGCCAGCTGGTGGCGTTACGCCTGATCGAGGTGGATCTGTCCGGG
CATGGCGGATTGTCCATTTCAGAGGACGGGAGACGGTTCCTGCGCGAAAAGCCTTCCCTGATGCTGAGAATCCCGTCCGC
GCCCCGTGCGGCACGGCGAGAGGCGCCGCGCAACTCGACATCGACGGCTCTGCCGGCGGCCGACCGTGGCCTCTTTGAGG
CGCTGCGTGCCAAGCGCATGGAAATTGCCCGCGCGCAGAACGTTCCACCCTATGTGATCTTTCACGACAAGACCCTCATT
GAACTCGCCGCGGCAAGACCGGCCTCTGCGAAGGAAATGGCGCAGATCGCCGGTGTTGGGGAAACCAAGCTGGAGCGGTA
CGGCCCCGCCTTTCTGGACACGATAATCCAGCACGCTGCTGGCGAATGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

RQC domain (RQC)

(398-509)

Helicase conserved C-terminal domain (Helicase_C)

(219-322)

HRDC domain (HRDC)

(529-595)

DEAD/DEAH box helicase (DEAD)

(22-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.645

100

0.377

Multiple sequence alignment