Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CFBP5877_RS09110 Genome accession   NZ_CP039897
Coordinates   1746427..1748100 (-) Length   557 a.a.
NCBI ID   WP_080824703.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5877     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741427..1753100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5877_RS09085 (CFBP5877_09085) - 1741596..1742129 (+) 534 WP_080824708.1 GNAT family N-acetyltransferase -
  CFBP5877_RS09090 (CFBP5877_09090) - 1742134..1743027 (-) 894 WP_137066273.1 aminoglycoside phosphotransferase family protein -
  CFBP5877_RS09095 (CFBP5877_09095) ligA 1743090..1745264 (-) 2175 WP_080824706.1 NAD-dependent DNA ligase LigA -
  CFBP5877_RS09100 (CFBP5877_09100) - 1745438..1745950 (+) 513 WP_080824705.1 hypothetical protein -
  CFBP5877_RS09105 (CFBP5877_09105) - 1746035..1746376 (+) 342 WP_130932422.1 hypothetical protein -
  CFBP5877_RS09110 (CFBP5877_09110) recN 1746427..1748100 (-) 1674 WP_080824703.1 DNA repair protein RecN Machinery gene
  CFBP5877_RS09115 (CFBP5877_09115) - 1748116..1748982 (-) 867 WP_080824702.1 outer membrane protein assembly factor BamD -
  CFBP5877_RS09120 (CFBP5877_09120) lpxC 1749216..1750172 (-) 957 WP_080824701.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  CFBP5877_RS09125 (CFBP5877_09125) ftsZ 1750443..1752197 (-) 1755 WP_080824700.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 60279.09 Da        Isoelectric Point: 4.8049

>NTDB_id=318487 CFBP5877_RS09110 WP_080824703.1 1746427..1748100(-) (recN) [Agrobacterium tumefaciens strain CFBP5877]
MLVQLSIRDIVLIERLDLSFEAGLSVLTGETGAGKSILLDSLSLALGGRGDGGLVRHGEDKGQVTATFEVPNDHPTRLLL
RENGLDDDGDLIFRRVQSADGRTKAYVNDQAVSVQMMRQLGQMLVEIHGQHDDRALVDTDAHRTLLDAFAGLSDEARTVQ
DLYRTWKDADRALKTHRAKVEAAAREADYLRSSVEELETLSPRDGEEDELAERRAVMQKSERIAGDIAEASEFLNGNASP
VPVIASMMRRLERKSHEAPGLLEDTVQLLDAALENLSNAQMEVEAALRRTEFDPRELERVEERLFALRAAGRKYNVAVPD
LPALAEKMVADLADLDAGEEKLGKLEANLGVVKADFDRAAQSLSEKRRNAAEALSGAVMAELPALKLERARFTVEVTSDP
EQATADGIDTVEFHVQTNPGTRPGPIMKVASGGELSRFLLALKVALADRGSAPTLVFDEIDTGVGGAVADAIGQRLRRLS
KTVQVLSVTHAPQVAARAATHLLISKGPSGDGTERIATRVATMEPKHRTEEIARMLAGASVTDEARAAAIKLLAAEE

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=318487 CFBP5877_RS09110 WP_080824703.1 1746427..1748100(-) (recN) [Agrobacterium tumefaciens strain CFBP5877]
ATGCTGGTCCAGCTCTCGATACGCGACATCGTCCTGATTGAAAGGCTCGACCTCAGTTTCGAGGCGGGCCTTTCCGTATT
GACGGGTGAAACGGGCGCCGGCAAATCCATCCTGCTTGACAGTCTCTCACTCGCGCTCGGCGGTCGTGGTGATGGCGGCC
TTGTGCGCCATGGCGAAGACAAGGGGCAGGTGACCGCCACTTTCGAAGTCCCAAACGATCATCCCACCCGGCTTCTCCTG
CGCGAAAACGGCCTTGATGACGATGGCGACCTTATTTTCCGCCGGGTACAATCCGCTGACGGGCGAACCAAGGCGTACGT
CAACGATCAGGCCGTGAGCGTGCAGATGATGCGCCAGCTCGGGCAGATGCTGGTTGAAATTCACGGCCAGCATGACGACC
GCGCGCTTGTCGATACCGACGCCCATCGCACCCTGCTTGATGCCTTTGCCGGGTTGAGCGATGAGGCGCGCACCGTTCAG
GATCTCTACCGCACCTGGAAGGATGCCGACCGTGCCCTGAAGACCCACCGGGCCAAGGTGGAGGCGGCGGCGCGCGAGGC
GGATTACCTGCGGTCTTCCGTCGAGGAGCTGGAAACCCTCTCACCGCGCGACGGTGAGGAGGATGAGCTGGCCGAGCGCC
GGGCGGTGATGCAGAAATCCGAACGCATTGCCGGCGATATTGCCGAAGCCAGCGAATTCCTGAATGGCAATGCTTCGCCC
GTGCCTGTCATTGCCTCAATGATGCGCCGGCTGGAGCGCAAAAGCCACGAAGCGCCCGGTCTTCTGGAAGATACCGTACA
ATTGCTGGATGCTGCGCTTGAGAACCTTTCCAATGCGCAGATGGAAGTGGAGGCGGCGCTGCGCCGCACCGAATTCGATC
CGCGTGAGCTGGAGCGCGTGGAAGAACGGTTGTTCGCCCTGCGCGCTGCCGGCCGCAAATATAATGTTGCCGTGCCTGAC
CTGCCGGCGCTTGCCGAAAAAATGGTGGCCGATCTCGCCGATCTCGATGCCGGTGAAGAAAAGCTCGGCAAGCTCGAGGC
CAATCTCGGTGTGGTGAAGGCCGATTTCGACCGGGCCGCCCAATCGCTTTCCGAAAAGCGCCGCAATGCGGCGGAGGCGC
TATCGGGGGCTGTCATGGCCGAACTTCCGGCGCTGAAGCTGGAGCGGGCGCGGTTTACCGTCGAAGTGACGTCCGATCCC
GAGCAGGCGACGGCTGACGGTATCGATACGGTGGAATTCCACGTCCAGACCAATCCGGGCACACGGCCGGGGCCGATCAT
GAAAGTGGCGTCGGGCGGCGAATTGTCCCGCTTCCTGCTGGCCCTGAAAGTGGCGCTGGCGGATCGCGGTTCGGCACCGA
CCCTGGTGTTCGATGAAATCGATACGGGCGTCGGCGGCGCGGTGGCAGATGCCATCGGCCAGCGGCTGCGCCGCCTGTCG
AAGACCGTACAGGTCCTGTCCGTCACCCATGCACCACAGGTAGCGGCACGGGCGGCGACCCATCTTCTCATTTCCAAAGG
CCCCTCCGGCGACGGCACCGAGCGCATCGCCACGCGTGTGGCGACGATGGAACCCAAACACCGCACCGAAGAAATCGCCC
GCATGCTGGCCGGGGCTTCTGTGACGGATGAGGCGCGGGCTGCGGCAATCAAATTGTTGGCGGCTGAAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(14-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

34.835

100

0.361