Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LP667_RS02550 Genome accession   NZ_CP032744
Coordinates   540957..542336 (+) Length   459 a.a.
NCBI ID   WP_021731255.1    Uniprot ID   A0A098RBX5
Organism   Lactiplantibacillus paraplantarum strain DSM 10667     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 535957..547336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP667_RS02525 (LP667_02525) - 536431..537123 (+) 693 WP_033609421.1 matrixin family metalloprotease -
  LP667_RS02530 (LP667_02530) - 537369..538700 (-) 1332 WP_021731259.1 aminopeptidase C -
  LP667_RS02535 (LP667_02535) rpiA 538776..539459 (-) 684 WP_021731258.1 ribose-5-phosphate isomerase RpiA -
  LP667_RS02540 (LP667_02540) - 539468..539764 (-) 297 WP_056988357.1 GNAT family N-acetyltransferase -
  LP667_RS02545 (LP667_02545) - 539903..540439 (+) 537 WP_021731256.1 trimetaphosphatase -
  LP667_RS02550 (LP667_02550) radA 540957..542336 (+) 1380 WP_021731255.1 DNA repair protein RadA Machinery gene
  LP667_RS02555 (LP667_02555) - 542352..543515 (+) 1164 WP_021731254.1 PIN/TRAM domain-containing protein -
  LP667_RS02570 (LP667_02570) gltX 544732..546222 (+) 1491 WP_021731252.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50019.32 Da        Isoelectric Point: 7.7217

>NTDB_id=318485 LP667_RS02550 WP_021731255.1 540957..542336(+) (radA) [Lactiplantibacillus paraplantarum strain DSM 10667]
MAKAKTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVSLTKTPRVKTKLKEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRST
IESTHPEFVVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAISVASSYRDQQTRPSDCFVGEVGLTGE
IRRVNRIESRVGEAAKLGFKRVFIPKNNLQGWDIPTGIEVIGVATLKEALQLALQQPNY

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=318485 LP667_RS02550 WP_021731255.1 540957..542336(+) (radA) [Lactiplantibacillus paraplantarum strain DSM 10667]
GTGGCAAAAGCAAAAACGCAGTTTGTTTGTTCCAACTGCGGCTATTCGACACCACGGTACTTAGGGCGGTGTCCGAACTG
TGGTGAATGGAATACATTAACTGAAGAACATTTTGATACGAAGCCGGATCGCAAGTCCCGCGTGAGCTTTGCTGGTAAGT
CGGCTAAGCCACAACGACTTAAAGAAGTTTCGTTGACAAAGACGCCCCGAGTCAAGACTAAGTTAAAAGAATTTAACCGG
GTCTTGGGTGGCGGAGTCGTACCGGGGTCACTTGTTTTAATCGGTGGTGATCCTGGAATTGGAAAGTCAACGTTGTTACT
GCAAGTTTCTGGGCAATTGGCCGAGACGGGTGGCTCTGTGTTGTACGTGACTGGTGAAGAAAGTGCCTCACAAGTTAAGA
TGCGGGCGGACCGGTTGGCTGTTAGCAGCGAAGATTTTTATCTTTATCCTGAGACTGATATGTCGAATATTCGTTCAACG
ATTGAATCGACGCATCCAGAATTTGTGGTCATTGATTCGGTGCAAACGATGCAAGAACCTGATATGGACTCGGCAATTGG
TTCGGTGTCACAAATTCGTGAGATTACGGCCGAGTTACTTCAGATTGCAAAGACTAACGGCATCACTATTTTTATTGTCG
GGCATGTGACTAAGGGCGGGGCCATTGCTGGGCCTAAGATCTTAGAACATATGGTTGATACCGTTTTGTACTTTGAAGGT
GATTTACACCATACGTACCGCATTTTACGGGCAGTCAAGAATCGATTCGGGTCAACGAATGAACTGGGGATTTTTGAAAT
GCGGACGGGTGGTTTATATGAAGTGGCCAATCCGTCAGAGATCTTCTTGGAAGAACGTCTGAAGGATGCCACGGGTTCCG
CCATTGTTGTTTCAATGGAAGGGACGCGACCAATCTTAGTAGAAGTTCAAGCGCTGGTCACACCAACGGTCTTTGGTAAT
GCGAAGCGGACGGCGAGTGGCTTAGATCATAATCGGGTTTCGCTAATTATGGCGGTACTGGAAAAACGGGCTAGTCTGAT
GTTGCAAAATCAAGACGCGTACTTAAAAGCGGCTGGTGGGGTCAAGTTGGATGAACCGGCAATTGACTTGGCGATTGCCA
TCAGTGTGGCTTCTAGTTATCGGGACCAGCAAACTCGCCCAAGTGACTGTTTTGTTGGTGAAGTGGGCTTGACTGGTGAA
ATTCGTCGAGTTAACCGAATTGAGTCACGGGTTGGTGAAGCAGCCAAACTTGGATTTAAGCGAGTCTTTATTCCAAAGAA
TAATCTACAAGGCTGGGATATACCAACCGGGATTGAAGTAATTGGGGTCGCAACGTTAAAAGAAGCACTCCAATTAGCAT
TACAACAACCAAATTATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098RBX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.406

98.257

0.662
  radA Streptococcus pneumoniae D39

67.406

98.257

0.662
  radA Streptococcus pneumoniae R6

67.406

98.257

0.662
  radA Streptococcus pneumoniae TIGR4

67.406

98.257

0.662
  radA Streptococcus mitis NCTC 12261

67.406

98.257

0.662
  radA Streptococcus mitis SK321

67.406

98.257

0.662
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

99.346

0.654

Multiple sequence alignment