Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D8N35_RS14170 Genome accession   NZ_CP032739
Coordinates   2873652..2875325 (-) Length   557 a.a.
NCBI ID   WP_010747998.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain EC-369     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2868652..2880325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8N35_RS14145 (D8N35_14145) pstB 2868848..2869654 (-) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -
  D8N35_RS14150 (D8N35_14150) pstA 2869668..2870552 (-) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  D8N35_RS14155 (D8N35_14155) pstC 2870552..2871472 (-) 921 WP_005225781.1 phosphate ABC transporter permease subunit PstC -
  D8N35_RS14160 (D8N35_14160) - 2871570..2872424 (-) 855 WP_060792430.1 phosphate ABC transporter substrate-binding protein PstS -
  D8N35_RS14165 (D8N35_14165) - 2872825..2873556 (-) 732 WP_205589232.1 alpha/beta hydrolase -
  D8N35_RS14170 (D8N35_14170) recN 2873652..2875325 (-) 1674 WP_010747998.1 DNA repair protein RecN Machinery gene
  D8N35_RS14175 (D8N35_14175) argR 2875341..2875790 (-) 450 WP_005225777.1 arginine repressor -
  D8N35_RS14180 (D8N35_14180) - 2875888..2876709 (-) 822 WP_121261668.1 TlyA family RNA methyltransferase -
  D8N35_RS14185 (D8N35_14185) - 2876706..2877602 (-) 897 WP_121261670.1 polyprenyl synthetase family protein -
  D8N35_RS14190 (D8N35_14190) - 2877599..2877820 (-) 222 WP_121261672.1 exodeoxyribonuclease VII small subunit -
  D8N35_RS14195 (D8N35_14195) xseA 2877801..2879153 (-) 1353 WP_010747995.1 exodeoxyribonuclease VII large subunit -
  D8N35_RS14200 (D8N35_14200) - 2879154..2880005 (-) 852 WP_005235351.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62560.72 Da        Isoelectric Point: 4.5175

>NTDB_id=318428 D8N35_RS14170 WP_010747998.1 2873652..2875325(-) (recN) [Enterococcus casseliflavus strain EC-369]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQLEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDAFKAELAS
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=318428 D8N35_RS14170 WP_010747998.1 2873652..2875325(-) (recN) [Enterococcus casseliflavus strain EC-369]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACTTGCACCTGTCTTTTCATGAGGGAATGACGGCTCT
AACAGGTGAAACAGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTGGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCTGGAGTTCAAAGAGCTGACC
GCAGATCTGGGTATTGATGAAGAGGAAGTTCTGATCGTACAACGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
GAATGGTCGAACTGTTACCTTGTCGGTTTTGCGCCAAATCGGCTTGTTTTTAGTTGATATCCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGCCTTTAAAGCGGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAACAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCCGCCGAAGAA
GTTAATAGCCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTGGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCAATT
CCTGTGATTCTTGCTTATTATGATGAGATCAGTAAAGAAATCAGCGAGTCTGCCTATACAGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTACGGTTTGCATCT
GGTTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACCACCAACCCCGGTGAAGGCATGAAACC
GTTAGTGCGAGTTGCTTCTGGAGGAGAGCTTTCCCGGATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGACGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATTCAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.488

Multiple sequence alignment