Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FAH66_RS07545 Genome accession   NZ_CP039887
Coordinates   1564921..1565427 (+) Length   168 a.a.
NCBI ID   WP_049328425.1    Uniprot ID   -
Organism   Neisseria subflava strain ATCC 49275     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559921..1570427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH66_RS07520 (FAH66_07520) - 1561359..1562732 (+) 1374 WP_137041200.1 Na+/H+ antiporter family protein -
  FAH66_RS07525 (FAH66_07525) - 1562734..1562961 (+) 228 WP_049350873.1 SlyX family protein -
  FAH66_RS07530 (FAH66_07530) lysA 1563064..1564284 (-) 1221 WP_137041201.1 diaminopimelate decarboxylase -
  FAH66_RS07535 (FAH66_07535) - 1564301..1564471 (-) 171 WP_137041621.1 lipoprotein -
  FAH66_RS07540 (FAH66_07540) cyaY 1564543..1564866 (+) 324 WP_049328424.1 iron donor protein CyaY -
  FAH66_RS07545 (FAH66_07545) luxS 1564921..1565427 (+) 507 WP_049328425.1 S-ribosylhomocysteine lyase Regulator
  FAH66_RS07550 (FAH66_07550) - 1565613..1567208 (+) 1596 WP_137041202.1 hypothetical protein -
  FAH66_RS07555 (FAH66_07555) - 1567319..1568008 (-) 690 WP_049328427.1 hypothetical protein -
  FAH66_RS07560 (FAH66_07560) - 1567990..1569048 (-) 1059 WP_137041203.1 beta-ketoacyl synthase N-terminal-like domain-containing protein -
  FAH66_RS07565 (FAH66_07565) - 1569045..1569335 (-) 291 WP_137041204.1 acyl carrier protein -
  FAH66_RS07570 (FAH66_07570) - 1569419..1570144 (-) 726 WP_137041205.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18797.62 Da        Isoelectric Point: 5.2243

>NTDB_id=318409 FAH66_RS07545 WP_049328425.1 1564921..1565427(+) (luxS) [Neisseria subflava strain ATCC 49275]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQKVADAWLASMQDVLTVQDQSKIPELNEYQCGTYMMHSLAEAHEIAQNVLARKVAVNKNEELT
LDESLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=318409 FAH66_RS07545 WP_049328425.1 1564921..1565427(+) (luxS) [Neisseria subflava strain ATCC 49275]
ATGCCCCTACTAGACAGTTTCAAAGTCGACCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCAAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTTGACCTGCGTTTCTGCATTCCCAACAAAGAAATCCTGCCCGAAAAAGGCATTC
ATACGCTGGAACACCTGTTCGCAGGCTTTATGCGCGACCACTTAAACGGCAACGGCGTTGAAATCATCGATATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTCATCGGTACGCCCGACGAGCAAAAAGTGGCCGACGCATGGCTCGCTTC
AATGCAGGATGTTTTGACCGTTCAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGTACCTATATGATGC
ACTCGCTTGCCGAAGCACACGAAATTGCCCAAAACGTTTTGGCACGCAAAGTCGCCGTCAATAAAAACGAAGAGCTGACA
TTGGACGAAAGCCTGTTGAACGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.246

99.405

0.768