Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AFLV_RS05160 Genome accession   NC_011567
Coordinates   959031..960761 (+) Length   576 a.a.
NCBI ID   WP_012574604.1    Uniprot ID   B7GHG6
Organism   Anoxybacillus flavithermus WK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 954031..965761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFLV_RS05135 (Aflv_0946) - 954472..954684 (+) 213 WP_004889602.1 exodeoxyribonuclease VII small subunit -
  AFLV_RS05140 (Aflv_0947) - 954687..955559 (+) 873 WP_012574601.1 polyprenyl synthetase family protein -
  AFLV_RS05145 (Aflv_0948) dxs 955731..957623 (+) 1893 WP_041638153.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AFLV_RS05150 (Aflv_0949) - 957627..958469 (+) 843 WP_012574603.1 TlyA family RNA methyltransferase -
  AFLV_RS05155 (Aflv_0950) argR 958563..959012 (+) 450 WP_004889608.1 transcriptional regulator ArgR -
  AFLV_RS05160 (Aflv_0951) recN 959031..960761 (+) 1731 WP_012574604.1 DNA repair protein RecN Machinery gene
  AFLV_RS05165 (Aflv_0952) spoIVB 960877..962154 (+) 1278 WP_012574605.1 SpoIVB peptidase -
  AFLV_RS05170 (Aflv_0953) spo0A 962372..963151 (+) 780 WP_012574606.1 sporulation transcription factor Spo0A -
  AFLV_RS15055 (Aflv_0954) - 963174..963320 (-) 147 WP_064498956.1 YycC family protein -
  AFLV_RS05175 (Aflv_0955) - 963376..964110 (+) 735 WP_012574607.1 glycerophosphodiester phosphodiesterase -
  AFLV_RS05180 (Aflv_0956) - 964102..964356 (-) 255 WP_012574608.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65582.54 Da        Isoelectric Point: 4.9594

>NTDB_id=31838 AFLV_RS05160 WP_012574604.1 959031..960761(+) (recN) [Anoxybacillus flavithermus WK1]
MLAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGETKAEIEGLFLLEQGDHPCYSK
CAELGIDISDGMIVLRRELTINGKSVCRVNGKLVTIATLREIGSTLVDIHGQHEHQELLDESKHLHLLDEYGGERIREAL
EEYGSLYTAYERVKRQLQKLNENEQQMAHRLDLLTFQLDEIQKAELQLDEDEQLMEERRKIVNFQKIYEALQSSYEALYG
EQRGLDWIGLAMNHLDHVSQIDSSLKQAQEVVSNCYYLLEEVAHQLREQLDQLEYDPLRLDEIESRLNEINHLKRKYGQT
VRDILEYAAKVEEEIETIQHRDDHIHKLQTELQSITADLLVEAKHISELRMQYAKQLIDDIHQELKDLYMEKTTFDVVFR
KRQGTYDDPLLDGTPVKLQADGIDEVEFYISTNPGEPLKPLAKVASGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVARHSQVLCISHLPQVAAMADTHLFIAKETKDGRTKTTVEALNEQEKINEISRMISGVEITDLTKQH
ARELLQLAKKIKNETT

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=31838 AFLV_RS05160 WP_012574604.1 959031..960761(+) (recN) [Anoxybacillus flavithermus WK1]
ATGTTAGCGGAGTTATCTATCAAAAATTTTGCCATTATTGAATCCCTTTCGCTTTCGTTTGAAAAAGGATTAACCGTTTT
AACTGGAGAAACGGGAGCGGGAAAATCCATTATTATTGATGCCATTCATTTGTTAATTGGCGGACGCGGCTCAGCAGAAT
TTGTTCGATACGGCGAAACAAAAGCAGAAATCGAAGGTCTTTTTTTGCTTGAACAAGGTGATCACCCGTGTTACAGCAAA
TGTGCCGAGCTTGGCATCGATATAAGCGATGGGATGATTGTGCTTCGTCGAGAGCTAACGATAAACGGAAAAAGCGTCTG
TCGCGTAAACGGAAAATTAGTCACGATCGCTACATTGCGTGAAATTGGTTCCACACTTGTCGATATTCACGGACAACATG
AGCATCAAGAGTTGCTTGATGAAAGTAAGCATTTACATTTATTAGACGAATATGGCGGTGAGCGTATTCGCGAAGCGTTG
GAAGAATACGGATCTTTGTATACCGCATACGAGCGAGTCAAGCGTCAACTGCAAAAGCTGAATGAAAATGAGCAACAAAT
GGCACATCGTCTAGATTTATTAACGTTTCAGTTAGATGAAATTCAAAAAGCAGAGCTACAGTTAGATGAAGATGAACAGC
TAATGGAAGAGCGGCGAAAAATCGTTAACTTCCAGAAAATATACGAGGCGTTACAAAGTAGCTATGAAGCGCTTTACGGG
GAGCAACGCGGACTTGATTGGATTGGATTAGCGATGAATCATTTAGATCATGTGAGCCAAATCGATTCATCGTTGAAACA
AGCCCAAGAAGTTGTATCGAACTGTTATTATTTGTTAGAAGAAGTGGCTCATCAACTGCGTGAGCAATTAGATCAATTAG
AATACGATCCGCTTCGACTTGATGAAATTGAAAGTCGCTTAAATGAAATTAACCATTTGAAACGCAAGTATGGCCAAACG
GTACGTGACATCTTAGAATATGCGGCGAAAGTGGAAGAAGAAATTGAAACGATTCAACACCGCGATGATCATATTCATAA
ATTGCAGACCGAACTTCAATCCATTACGGCTGATTTATTAGTTGAAGCGAAACATATAAGCGAATTGCGTATGCAATATG
CGAAACAACTGATCGACGACATTCATCAAGAACTAAAAGATTTATACATGGAAAAAACGACGTTTGATGTTGTTTTTCGA
AAACGTCAAGGAACGTACGATGATCCATTGCTTGACGGAACGCCTGTAAAGTTGCAAGCAGACGGGATAGACGAAGTTGA
GTTTTACATTTCAACGAATCCGGGGGAACCGTTAAAACCGCTTGCCAAAGTTGCATCAGGTGGAGAATTATCGCGCATGA
TGCTTGCCTTAAAGAGCATTTTCTCTAAACATCAAGGTGTCACATCTATTATTTTTGATGAAGTCGATACCGGTGTAAGC
GGTCGCGTCGCTCAAGCCATTGCGGAAAAAATTTATCGCGTGGCACGCCATTCGCAAGTATTATGCATTTCGCACTTACC
ACAAGTGGCAGCGATGGCGGATACGCATTTATTTATTGCAAAAGAAACGAAAGATGGACGGACAAAAACAACGGTGGAAG
CGTTAAACGAACAAGAAAAAATTAACGAAATTAGCCGTATGATTTCTGGAGTGGAGATTACAGACTTAACGAAACAGCAT
GCACGTGAGTTATTGCAATTAGCTAAAAAGATCAAAAACGAAACAACATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7GHG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.174

99.826

0.641

Multiple sequence alignment