Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D8B20_RS02910 Genome accession   NZ_CP032702
Coordinates   632328..633710 (+) Length   460 a.a.
NCBI ID   WP_145886943.1    Uniprot ID   -
Organism   Candidatus Pantoea soli strain DSM 32899     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 627328..638710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8B20_RS02880 (D8B20_02885) - 627505..627687 (+) 183 WP_261388084.1 hypothetical protein -
  D8B20_RS02890 (D8B20_02895) - 627987..628745 (+) 759 WP_261388058.1 ankyrin repeat domain-containing protein -
  D8B20_RS21770 - 629496..629618 (+) 123 WP_261388059.1 hypothetical protein -
  D8B20_RS02900 (D8B20_02905) - 630555..631229 (-) 675 WP_145886939.1 YtjB family periplasmic protein -
  D8B20_RS02905 (D8B20_02910) serB 631337..632314 (+) 978 WP_145886941.1 phosphoserine phosphatase -
  D8B20_RS02910 (D8B20_02915) radA 632328..633710 (+) 1383 WP_145886943.1 DNA repair protein RadA Machinery gene
  D8B20_RS02915 (D8B20_02920) nadR 633881..635107 (+) 1227 WP_145886944.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  D8B20_RS02920 (D8B20_02925) ettA 635158..636825 (-) 1668 WP_145886947.1 energy-dependent translational throttle protein EttA -
  D8B20_RS02925 (D8B20_02930) deoR 636938..637702 (-) 765 WP_145886948.1 DNA-binding transcriptional repressor DeoR -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49292.90 Da        Isoelectric Point: 7.4218

>NTDB_id=318349 D8B20_RS02910 WP_145886943.1 632328..633710(+) (radA) [Candidatus Pantoea soli strain DSM 32899]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNDRLSGYAGNAGTSRVQKLSEISLEALPRFSTT
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCKLAEGMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPSGNAPKKAIDGMQVFSAKKLADALAILDEL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=318349 D8B20_RS02910 WP_145886943.1 632328..633710(+) (radA) [Candidatus Pantoea soli strain DSM 32899]
TTGGCCAAAGCGGCAAAACGCGCATTCGTGTGCAACGAATGTGGCGCTGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGCCACGCATGGAACACCATTACCGAGGTGCGCATTGCCGCCTCGCCTGCGGCGGCGCGTAACGATCGCCTGAGCGGCT
ACGCCGGCAACGCCGGCACCAGCCGGGTTCAGAAGCTGTCAGAGATCAGTCTGGAAGCCCTGCCGCGCTTCTCCACCACC
TTTAAAGAGTTTGACCGCGTACTGGGCGGCGGCGTGGTGCCGGGCAGCGCTATTCTGATTGGCGGCAGCCCCGGTGCCGG
CAAATCCACGCTGCTGCTGCAGGTCATGTGCAAGCTGGCAGAAGGGATGAAAACCCTCTACGTCACCGGTGAAGAGTCGC
TGCAGCAGGTGGCAATGCGCGCGCATCGTCTGGGTTTACCCACCGATAACCTGAACATGCTGTCGGAAACCAGCATTGAA
CAAATCTGCCTGATTGCCGAGCAGGAGCAGCCGAAGCTGATGGTGATCGACTCCATCCAGGTGATGCACATGGCGGATAT
TCAGTCCTCTCCCGGCAGTGTAGCGCAGGTGCGTGAAACCGCGGCCTACCTGACGCGTTTCGCCAAAACGCGCGGGGTGG
CCATTATCATGGTGGGTCACGTCACCAAAGATGGCTCGCTGGCCGGTCCGAAGGTGCTGGAGCACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGACGCCGATTCCCGTTTCCGCACGCTGCGCAGCCACAAAAACCGTTTTGGTGCCGTCAATGAGCT
GGGCGTATTCGCCATGACCGAGCAGGGCATGCGCGAAGTCAGCAACCCGTCTGCCATCTTCCTGTCACGCGGTGATGAGA
TCACCTCAGGCAGTTCAGTGATGGTGGTCTGGGAGGGCACGCGGCCGCTGCTGGTTGAGATCCAGGCGCTGGTGGACCAC
TCCATGATGGGCAATCCACGGCGCGTGGCGGTGGGTCTGGAACAGAACCGGCTGGCCATCCTGCTGGCGGTACTGCACCG
TCACGGCGGCTTGCAGATGGCGGATCAGGACGTGTTCGTCAACGTCGTGGGCGGGGTGAAAGTCACGGAAACCAGTGCCG
ACCTGGCGCTGCTGCTGGCGATGGTCTCCAGCCTGCGCGATCGTCCGCTGCCGCAGGATCTGGTGATCTTCGGCGAAGTC
GGGCTGGCCGGCGAAATCCGCCCGGTGCCGAGCGGTCAGGAGCGCATATCCGAAGCCGCCAAGCACGGCTTTAAGCGTGC
CATCGTGCCATCCGGCAATGCGCCGAAGAAAGCCATCGACGGTATGCAGGTGTTCAGTGCCAAAAAGCTGGCGGACGCAC
TGGCGATTCTGGACGAGCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(86-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.629

100

0.48
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424

Multiple sequence alignment