Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AFLV_RS04110 Genome accession   NC_011567
Coordinates   773397..775751 (+) Length   784 a.a.
NCBI ID   WP_012574420.1    Uniprot ID   -
Organism   Anoxybacillus flavithermus WK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 768397..780751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFLV_RS04085 (Aflv_0735) - 768623..769903 (+) 1281 WP_012574415.1 replication-associated recombination protein A -
  AFLV_RS04090 (Aflv_0736) - 769977..770393 (+) 417 WP_041639284.1 Rrf2 family transcriptional regulator -
  AFLV_RS04095 (Aflv_0737) - 770409..771554 (+) 1146 WP_041638051.1 cysteine desulfurase family protein -
  AFLV_RS04100 (Aflv_0738) mnmA 771569..772666 (+) 1098 WP_041638052.1 tRNA 2-thiouridine(34) synthase MnmA -
  AFLV_RS04105 (Aflv_0739) - 772729..773385 (+) 657 WP_041638053.1 tetratricopeptide repeat protein -
  AFLV_RS04110 (Aflv_0740) recD2 773397..775751 (+) 2355 WP_012574420.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AFLV_RS04115 (Aflv_0741) - 775852..776043 (+) 192 WP_032100167.1 hypothetical protein -
  AFLV_RS15030 (Aflv_0742) - 776054..776194 (+) 141 WP_006320530.1 YrzQ family protein -
  AFLV_RS04120 (Aflv_0743) - 776282..777340 (+) 1059 WP_080513056.1 AI-2E family transporter -
  AFLV_RS04125 (Aflv_0744) alaS 777649..780282 (+) 2634 WP_012574423.1 alanine--tRNA ligase -
  AFLV_RS04130 (Aflv_0745) - 780366..780632 (+) 267 WP_035020016.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88204.73 Da        Isoelectric Point: 5.0010

>NTDB_id=31833 AFLV_RS04110 WP_012574420.1 773397..775751(+) (recD2) [Anoxybacillus flavithermus WK1]
MALQQQLDLDGRSFIKGVHVGTIFHNEDNLYSVIRVRVEETNEAHIEKDVVVTGYFPLLGEYDTYTFFGAFKEHPRFGKQ
YVVDHFRKEFPETKEGVIQYLSGGMFKGIGKKTAAAIVETLGERAISKILEDPDVLANVPKLTKAKAKQLYETLREHEGL
EQIMIALSQFGFGPQLSMKIYQVYKDETLQIIRTNPYQLVEDVEGIGFGRADDLGLQLGISGNHPDRIRAGCLYVMEQHC
MQEGHVYMTYEQLLTEVKQLLEAKRQEAVEVACISREMIHLSEEGKLIVEEDRFYIPSLYFAEKGIVSNVKRLLEQKGMT
TFSEAEFLLALGEWEEEANIQYSQKQKEAIQQALCSPLFILTGGPGTGKTTVINGIVHLFAKLHGLSLDPTSYDTDEPFP
ILLAAPTGRAAKRMTESTGLPAMTIHRLLGWSGDGFQRGEDEPINGKLLIVDEMSMVDTWLANQLLKSVPSSMQVIFVGD
EDQLPSVGPGQVLKDLLRANVIPTVRLTDIYRQAEGSSIISLAHAIKDGNIPHDLTFPQKDRSFIRCTGGQVVDVVKKVA
ENAKQKGYRAKDVQVLAPMYRGHAGIDRLNETLQQLFNPKQDNKRELTFGDVVYRVGDKVLQLVNQPDENVFNGDIGEIV
AIFYANENVEKQDLVVVSFDGNEVTYPKQELNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSKQY
LILCGEEEAFQLGVMRTDDGTRQTTLYEKLTNTISPEQQLLPMEDANIGMEGVTPYDFMENDVT

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=31833 AFLV_RS04110 WP_012574420.1 773397..775751(+) (recD2) [Anoxybacillus flavithermus WK1]
ATGGCGTTGCAACAACAGTTAGACTTAGACGGACGATCGTTTATTAAAGGCGTCCATGTCGGTACCATTTTTCATAACGA
AGACAATTTATATTCAGTTATTCGTGTACGCGTGGAAGAAACAAATGAAGCGCATATAGAAAAAGACGTTGTTGTGACAG
GCTATTTCCCTTTGCTCGGTGAGTATGATACATATACGTTTTTCGGCGCATTTAAAGAACATCCGCGCTTTGGAAAACAA
TATGTTGTTGATCATTTTCGAAAAGAGTTTCCTGAAACGAAAGAAGGAGTGATTCAATATTTATCGGGCGGCATGTTTAA
AGGGATCGGGAAAAAAACAGCAGCCGCGATCGTAGAAACGTTAGGTGAGCGAGCGATTTCAAAAATATTAGAAGATCCCG
ATGTGCTTGCGAACGTACCGAAGCTAACAAAAGCAAAAGCAAAGCAGTTGTATGAGACGTTGCGCGAACATGAAGGATTA
GAACAAATTATGATTGCTTTATCGCAATTTGGGTTTGGACCTCAATTATCGATGAAAATTTATCAAGTGTACAAAGATGA
AACGTTACAAATCATTCGCACAAATCCATATCAACTTGTCGAAGACGTTGAAGGAATTGGATTTGGTCGCGCTGATGATC
TCGGCTTACAGCTCGGTATTTCGGGCAATCATCCGGATCGCATTCGGGCAGGTTGTTTATACGTCATGGAGCAACATTGC
ATGCAAGAAGGACATGTGTATATGACGTATGAACAGCTCCTTACAGAAGTGAAACAATTATTAGAGGCGAAACGGCAAGA
AGCCGTTGAAGTTGCTTGCATTTCCCGCGAAATGATCCATTTATCTGAAGAAGGAAAGCTAATTGTGGAAGAAGATCGTT
TTTACATCCCTTCCTTGTATTTTGCAGAAAAAGGTATCGTGTCAAACGTGAAGCGGCTTCTTGAGCAAAAGGGCATGACT
ACGTTTTCTGAAGCGGAATTTTTACTGGCGCTCGGTGAATGGGAAGAAGAAGCAAACATTCAATATTCGCAAAAACAAAA
AGAGGCGATTCAACAAGCCCTTTGTTCCCCGTTGTTTATTTTAACAGGCGGACCAGGAACAGGAAAAACGACGGTCATTA
ACGGCATTGTTCATTTGTTCGCTAAATTGCATGGGCTGTCGCTTGATCCGACGAGCTATGATACGGACGAGCCTTTTCCG
ATTTTACTTGCTGCTCCAACCGGACGTGCAGCGAAGCGCATGACGGAATCGACAGGTTTGCCGGCAATGACGATTCATCG
TTTGCTCGGCTGGAGTGGTGACGGGTTTCAACGCGGGGAAGACGAACCGATTAACGGAAAGTTGTTAATTGTCGATGAAA
TGTCCATGGTCGATACGTGGCTAGCGAATCAGTTATTAAAGTCTGTTCCATCATCCATGCAAGTCATTTTCGTTGGCGAT
GAAGATCAGTTGCCGTCCGTCGGACCAGGACAAGTGCTGAAAGACTTGCTTCGCGCAAACGTCATTCCGACCGTTCGCTT
GACAGACATTTATCGTCAGGCAGAAGGTTCGTCGATCATTTCCCTTGCTCATGCGATTAAAGATGGAAACATTCCTCACG
ATTTGACGTTTCCGCAAAAAGACCGCTCATTTATTCGTTGCACGGGCGGACAAGTCGTTGACGTCGTAAAAAAAGTAGCT
GAAAACGCAAAACAAAAAGGATATCGCGCAAAAGACGTTCAAGTGCTCGCGCCGATGTATCGCGGTCATGCAGGAATTGA
TCGATTAAACGAAACGTTGCAACAGCTATTTAATCCAAAACAGGATAATAAACGAGAGCTTACGTTTGGTGATGTTGTTT
ATCGCGTAGGCGATAAAGTGTTGCAGCTAGTCAATCAGCCGGATGAAAATGTGTTTAATGGGGACATCGGTGAGATCGTT
GCAATTTTTTATGCCAACGAAAACGTAGAAAAACAAGATCTCGTTGTCGTTTCGTTTGATGGAAACGAAGTGACATACCC
AAAACAAGAATTGAATCAAATTACGCACGCCTACTGTTGTTCGATTCATAAATCGCAAGGAAGCGAATTTCCGATCGTCA
TTTTGCCTGTTGTAAAAAGTTATTATCGCATGTTAAGGCGCAATTTATTGTACACAGCTATTACGCGCAGTAAGCAATAT
TTAATTTTATGCGGTGAAGAAGAAGCGTTCCAGCTTGGGGTCATGCGAACAGATGACGGAACGAGACAAACGACATTGTA
CGAAAAATTAACAAATACTATTTCGCCCGAGCAACAGTTGCTTCCGATGGAAGATGCAAACATCGGAATGGAAGGTGTTA
CCCCGTATGACTTTATGGAAAATGACGTAACATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-657)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.886

100

0.614

Multiple sequence alignment