Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E3175_RS10060 Genome accession   NZ_CP039837
Coordinates   2073686..2075113 (-) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O55:H7 strain USDA5905     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2068686..2080113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3175_RS10030 (E3175_10215) yeeZ 2068741..2069565 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  E3175_RS10035 (E3175_10220) yeeY 2069611..2070540 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  E3175_RS10040 (E3175_10225) yoeI 2070755..2070817 (+) 63 WP_010723108.1 membrane protein YoeI -
  E3175_RS10045 (E3175_10230) plaP 2070807..2072165 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E3175_RS10050 (E3175_10235) tsuA 2072344..2073402 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  E3175_RS10055 (E3175_10240) tsuB 2073416..2073643 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E3175_RS10060 (E3175_10245) sbcB 2073686..2075113 (-) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  E3175_RS10065 (E3175_10250) dacD 2075322..2076488 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E3175_RS10070 (E3175_10255) sbmC 2076607..2077080 (+) 474 WP_001105369.1 DNA gyrase inhibitor SbmC -
  E3175_RS10075 (E3175_10260) yeeA 2077279..2078337 (+) 1059 WP_001202490.1 FUSC family protein -
  E3175_RS10080 (E3175_10265) tmaR 2078509..2078838 (+) 330 WP_000450409.1 DUF496 family protein -
  E3175_RS28525 (E3175_10270) - 2078939..2079121 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  E3175_RS28530 (E3175_10275) - 2079184..2079321 (+) 138 Protein_1994 transposase domain-containing protein -
  E3175_RS10095 (E3175_10280) - 2079610..2079702 (-) 93 Protein_1995 DUF957 domain-containing protein -
  E3175_RS10100 (E3175_10285) yeeW 2079736..2079930 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=318317 E3175_RS10060 WP_000980540.1 2073686..2075113(-) (sbcB) [Escherichia coli O55:H7 strain USDA5905]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=318317 E3175_RS10060 WP_000980540.1 2073686..2075113(-) (sbcB) [Escherichia coli O55:H7 strain USDA5905]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581