Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D11S_RS01010 Genome accession   NC_013416
Coordinates   196339..196974 (-) Length   211 a.a.
NCBI ID   WP_005548057.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans D11S-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 191339..201974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D11S_RS00985 (D11S_0210) - 191605..191889 (-) 285 WP_005548070.1 chaperone NapD -
  D11S_RS00990 (D11S_0212) narQ 192166..193869 (+) 1704 WP_005548066.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  D11S_RS00995 (D11S_0213) murB 193884..194909 (+) 1026 WP_005566996.1 UDP-N-acetylmuramate dehydrogenase -
  D11S_RS01000 (D11S_0214) - 194925..195239 (+) 315 WP_005548062.1 DUF2322 family protein -
  D11S_RS01005 (D11S_0215) rpoH 195424..196272 (+) 849 WP_005548059.1 RNA polymerase sigma factor RpoH -
  D11S_RS01010 (D11S_0216) sxy/tfoX 196339..196974 (-) 636 WP_005548057.1 TfoX/Sxy family DNA transformation protein Regulator
  D11S_RS01015 (D11S_02270) tuf 198261..199439 (-) 1179 Protein_193 elongation factor Tu -
  D11S_RS01020 (D11S_0220) fusA 199503..201605 (-) 2103 WP_005548681.1 elongation factor G -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23952.09 Da        Isoelectric Point: 10.4976

>NTDB_id=31822 D11S_RS01010 WP_005548057.1 196339..196974(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans D11S-1]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=31822 D11S_RS01010 WP_005548057.1 196339..196974(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans D11S-1]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAGAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374

Multiple sequence alignment