Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D8L92_RS09670 Genome accession   NZ_CP032681
Coordinates   2103306..2104664 (+) Length   452 a.a.
NCBI ID   WP_095900201.1    Uniprot ID   -
Organism   Capnocytophaga canimorsus strain RBWH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2098306..2109664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8L92_RS09650 (D8L92_09740) - 2100624..2101091 (-) 468 WP_013996232.1 hypothetical protein -
  D8L92_RS09655 (D8L92_09745) - 2101229..2101654 (+) 426 WP_013996233.1 2TM domain-containing protein -
  D8L92_RS09660 (D8L92_09750) - 2101651..2102139 (+) 489 WP_109861703.1 dihydrofolate reductase -
  D8L92_RS09665 (D8L92_09755) - 2102167..2103294 (+) 1128 WP_109861704.1 alpha/beta hydrolase -
  D8L92_RS09670 (D8L92_09760) radA 2103306..2104664 (+) 1359 WP_095900201.1 DNA repair protein RadA Machinery gene
  D8L92_RS09675 (D8L92_09765) - 2104684..2105418 (-) 735 WP_390888161.1 ThiF family adenylyltransferase -
  D8L92_RS09680 (D8L92_09770) - 2105572..2106000 (+) 429 WP_095917429.1 hypothetical protein -
  D8L92_RS09685 (D8L92_09775) - 2106086..2106391 (+) 306 WP_123874206.1 hypothetical protein -
  D8L92_RS09690 (D8L92_09780) gldD 2106396..2106959 (-) 564 WP_109861706.1 gliding motility lipoprotein GldD -
  D8L92_RS09695 (D8L92_09785) gldE 2106946..2108277 (-) 1332 WP_109862097.1 gliding motility-associated protein GldE -
  D8L92_RS09700 (D8L92_09790) - 2108303..2108716 (-) 414 WP_013996244.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49870.67 Da        Isoelectric Point: 7.9098

>NTDB_id=318172 D8L92_RS09670 WP_095900201.1 2103306..2104664(+) (radA) [Capnocytophaga canimorsus strain RBWH]
MAKVKTAYFCQHCGTQYSKWQGQCYGCKQWNTIVEEVVQTEEKKAWQEPEAKPKKVKYISLSEIDSAQETRLKTNNNELD
NVLGGGLVPGSVTLLGGEPGIGKSTLLLQIALNLPYKTLYVSGEESEKQIKMRADRIKKNTGNCYVLTEIKTQHIFQQIK
ELKPQILIIDSIQTLQSDYIEASAGSVSQIRECTSELIKFAKTTHVPVILIGHITKDGHIAGPKILEHMVDTVLQFEGDR
NHVYRILRALKNRFGSTSELGIFEMLGDGLREVNNPSEVLISKTEETISGTAIAATLEGMRPLMIEIQALVSTAVYGTPQ
RSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGFTLDDPATDLGVAMAILSSNEDIAIEKNVCFAAEIGLGGEVR
PVQRVEQRITEAEKLGFQTIFISKYSKLAIKNPAIKVVKVAKIEEAIQILFG

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=318172 D8L92_RS09670 WP_095900201.1 2103306..2104664(+) (radA) [Capnocytophaga canimorsus strain RBWH]
ATGGCAAAGGTAAAAACAGCGTATTTCTGTCAGCACTGTGGTACACAATACAGCAAATGGCAAGGTCAATGTTACGGATG
TAAGCAGTGGAACACCATTGTAGAGGAAGTGGTTCAAACTGAAGAAAAAAAAGCGTGGCAAGAGCCAGAAGCTAAACCTA
AAAAAGTAAAATACATTTCCCTTTCTGAAATTGATTCAGCACAAGAAACTCGCTTAAAAACCAATAATAACGAACTGGAT
AATGTGCTTGGAGGAGGCTTGGTACCTGGTTCGGTTACCTTGCTTGGAGGCGAACCAGGTATAGGTAAAAGTACACTTTT
GCTTCAAATAGCGCTTAATTTGCCTTACAAAACGCTCTATGTTTCTGGGGAAGAAAGCGAAAAACAGATAAAAATGCGAG
CAGATCGTATCAAAAAAAATACGGGAAACTGCTATGTACTGACCGAAATCAAAACCCAACATATATTTCAGCAAATTAAA
GAGCTCAAACCTCAAATCCTGATTATTGACTCCATACAAACCCTACAATCGGACTATATAGAGGCTTCGGCAGGAAGTGT
ATCGCAAATTCGCGAATGTACCTCCGAGCTAATAAAATTTGCTAAAACCACCCACGTACCTGTCATTTTGATTGGGCATA
TCACCAAGGACGGTCACATTGCTGGTCCGAAAATATTGGAGCATATGGTTGATACCGTGCTTCAGTTTGAGGGCGATCGC
AACCACGTGTATCGTATTTTACGCGCTTTAAAAAATCGTTTTGGTTCTACTTCTGAATTGGGTATTTTCGAGATGTTGGG
CGACGGTTTGCGCGAAGTAAACAATCCTTCAGAAGTGCTTATTTCGAAAACGGAAGAAACCATTAGCGGAACAGCCATTG
CTGCAACTTTGGAAGGAATGCGTCCTTTAATGATTGAAATTCAAGCCTTGGTAAGTACGGCCGTTTACGGAACGCCACAA
CGAAGTGCAACGGGGTTTAATGCCAAAAGGCTCAATATGTTATTGGCGGTACTTGAAAAAAGAGCTGGTTTTCGCCTTGG
AGCCAAAGACGTTTTCTTGAACATTACTGGAGGTTTCACTTTGGACGACCCTGCCACGGATTTAGGAGTGGCAATGGCAA
TACTTTCTTCCAATGAAGATATTGCTATTGAGAAAAATGTGTGTTTTGCTGCTGAAATTGGGCTAGGAGGTGAAGTTCGT
CCTGTACAGCGTGTGGAACAGCGCATTACCGAAGCTGAAAAATTAGGCTTCCAAACCATTTTTATTTCCAAATACAGCAA
ATTGGCAATAAAAAATCCTGCAATAAAAGTGGTCAAAGTGGCTAAAATAGAGGAAGCTATTCAAATCCTTTTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(327-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.277

100

0.48
  radA Streptococcus mitis SK321

47.577

100

0.478
  radA Streptococcus mitis NCTC 12261

47.577

100

0.478
  radA Streptococcus pneumoniae Rx1

47.577

100

0.478
  radA Streptococcus pneumoniae D39

47.577

100

0.478
  radA Streptococcus pneumoniae R6

47.577

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.478

Multiple sequence alignment