Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D7321_RS09080 Genome accession   NZ_CP032680
Coordinates   1808452..1810260 (+) Length   602 a.a.
NCBI ID   WP_127836029.1    Uniprot ID   A0A9W3Z298
Organism   Lactobacillus johnsonii strain ZLJ010     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1803452..1815260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7321_RS09055 (D7321_09055) - 1803834..1804616 (-) 783 WP_127836027.1 threonine/serine exporter family protein -
  D7321_RS09060 (D7321_09060) - 1804633..1806180 (-) 1548 WP_127836028.1 ABC-F family ATP-binding cassette domain-containing protein -
  D7321_RS09065 (D7321_09065) - 1806180..1806563 (-) 384 WP_014567847.1 hypothetical protein -
  D7321_RS09070 (D7321_09070) - 1806787..1807059 (+) 273 WP_014567848.1 hypothetical protein -
  D7321_RS09075 (D7321_09075) - 1807164..1808288 (-) 1125 WP_014567849.1 LCP family protein -
  D7321_RS09080 (D7321_09080) pepF 1808452..1810260 (+) 1809 WP_127836029.1 oligoendopeptidase F Regulator
  D7321_RS09085 (D7321_09085) - 1810329..1811840 (-) 1512 WP_164084827.1 lactate permease LctP family transporter -
  D7321_RS09090 (D7321_09090) - 1811962..1812753 (-) 792 WP_011162511.1 metal ABC transporter permease -
  D7321_RS09095 (D7321_09095) - 1812753..1813412 (-) 660 WP_004898011.1 ATP-binding cassette domain-containing protein -
  D7321_RS09100 (D7321_09100) - 1813451..1814350 (-) 900 WP_127836030.1 zinc ABC transporter substrate-binding protein -
  D7321_RS09105 (D7321_09105) - 1814653..1814931 (-) 279 WP_011162513.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68625.33 Da        Isoelectric Point: 4.6145

>NTDB_id=318163 D7321_RS09080 WP_127836029.1 1808452..1810260(+) (pepF) [Lactobacillus johnsonii strain ZLJ010]
MAIPTRNEVSDDLKWDLSRVFKDDQEWEQEYNQVATEIKNLGRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLDLLHRYVSLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDKERTAYINFLKAGSSDY
PTEIMKRAGVDMTKADYLRDAFNTFEKRLNEFEKIVNELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=318163 D7321_RS09080 WP_127836029.1 1808452..1810260(+) (pepF) [Lactobacillus johnsonii strain ZLJ010]
ATGGCTATTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGAACAAGAATATAATCAGGTCGCAACCGAAATTAAAAATTTAGGTAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAGGGGATTACAGAAATTTTATCTGTGAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAGATGAGCGCCGCTAT
CTCTTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAGACACTTGCTAAATTTATGCAAGATGAGCCCCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGCTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAATGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGCCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATACAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAATGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCGACTTACTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATTTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCCAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAAGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCTGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTGCATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAAATTACCGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTTAAGGGTA
CACTTTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCCGACGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTACGGCAATTTAAACCAAAGATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCATTTCTATTACAACTTTTATGTTTACCAATATGCAACAGGCTTTGCTGCTGCTACAGCTC
TCGCAAATAATGTTGTTCATGGTACTGACAAAGAACGTACCGCTTATATTAATTTCTTAAAGGCTGGCTCTTCAGATTAT
CCAACAGAGATAATGAAACGTGCCGGTGTCGATATGACAAAGGCTGATTACTTAAGAGACGCATTTAATACTTTTGAAAA
ACGACTTAATGAGTTTGAAAAAATCGTTAATGAATTGAAAACAATCTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.52

98.339

0.507

Multiple sequence alignment