Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DV532_RS21205 Genome accession   NZ_CP032677
Coordinates   4550971..4552341 (-) Length   456 a.a.
NCBI ID   WP_012274175.1    Uniprot ID   A0A1W2CNH3
Organism   Pseudomonas sp. Leaf58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4545971..4557341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV532_RS21185 (DV532_21185) - 4546203..4546400 (-) 198 WP_056801622.1 YbdD/YjiX family protein -
  DV532_RS21190 (DV532_21190) - 4546418..4548484 (-) 2067 WP_056801620.1 carbon starvation CstA family protein -
  DV532_RS21195 (DV532_21195) - 4548664..4549029 (+) 366 WP_056801617.1 PilZ domain-containing protein -
  DV532_RS21200 (DV532_21200) - 4549293..4550810 (+) 1518 WP_056801615.1 nucleobase:cation symporter-2 family protein -
  DV532_RS21205 (DV532_21205) radA 4550971..4552341 (-) 1371 WP_012274175.1 DNA repair protein RadA Machinery gene
  DV532_RS21210 (DV532_21210) mscL 4552519..4552938 (+) 420 WP_056801613.1 large-conductance mechanosensitive channel protein MscL -
  DV532_RS21215 (DV532_21215) - 4553044..4553820 (-) 777 WP_056801611.1 ferredoxin--NADP reductase -
  DV532_RS21220 (DV532_21220) - 4554034..4554741 (+) 708 WP_056801609.1 autoinducer binding domain-containing protein -
  DV532_RS21225 (DV532_21225) - 4554838..4555962 (+) 1125 WP_056801607.1 methyltransferase -
  DV532_RS21230 (DV532_21230) - 4556080..4556235 (-) 156 WP_082477012.1 DUF2474 domain-containing protein -
  DV532_RS21235 (DV532_21235) cydB 4556245..4557252 (-) 1008 WP_056801605.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48767.21 Da        Isoelectric Point: 6.8985

>NTDB_id=318119 DV532_RS21205 WP_012274175.1 4550971..4552341(-) (radA) [Pseudomonas sp. Leaf58]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=318119 DV532_RS21205 WP_012274175.1 4550971..4552341(-) (radA) [Pseudomonas sp. Leaf58]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAATGCGGCGAGTG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGCGGCGCCGCTGCGCCGAGTAGCGGCCGTGCCGGCTGGA
CCGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATCCCGCGCTTCACTACCAGCAGCACCGAA
CTGGACCGCGTGCTGGGCGGTGGCCTGGTAGATGGCTCGGTGGTGCTGATTGGCGGCGACCCTGGCATCGGCAAGTCGAC
TATCCTCCTGCAAACCCTGTGCAACATTGCCGTGGGCATGCCGGCGTTGTATGTCACCGGTGAAGAGTCGCAGCAACAGG
TGGCCATGCGTTCGCGGCGCTTGGGCCTGCCTCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAGACCATCATC
GCCACGGCGCGTGTGGAAAAGCCGCGGGTGATGGTGATCGATTCGATCCAGACCATTTTCACCGAGCAGCTGCAATCGGC
GCCCGGCGGCGTCGCCCAGGTACGCGAAAGCACGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATTTTCC
TGGTGGGCCACGTGACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTACTGGAGCATATGGTCGACACCGTGCTGTATTTC
GAAGGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTTGGTGCGGTCAACGAGCTGGGCGTGTT
CGGCATGACCGACCGCGGCCTGAAAGAGGTGTCCAACCCCTCGGCGATCTTCCTCAACCGCACCCAGGAAGAAGTGCCGG
GCAGCGTGGTGATGGCGACTTGGGAAGGCACCCGGCCAATGCTGGTGGAGGTGCAGGCCCTGGTCGATGACAGCCACTTG
GCCAATCCGCGCCGGGTAACCCTAGGCTTGGACCAGAACCGTCTGGCGATGTTGCTGGCAGTGCTGCACCGCCACGGCGG
TATTCCTACCCATGATCAGGACGTGTTCCTTAACGTGGTAGGCGGGGTGAAGGTGCTGGAGACGGCCTCGGACCTGGCGT
TGCTGGCGGCAGTGATGTCCAGCCTGCGTAACCGACCATTGGCCCATGGCTTGCTGGTGTTCGGCGAAATCGGCCTGTCG
GGCGAGGTGCGGCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCGGCAAAGCACGGCTTCAAGCGCGCCATCGTGCC
TAAGGGCAATGCGCCTAAAGAGCCGCCAGCAGGTTTGCAGGTGATTGCCGTTACCCGGCTGGAACAGGCCCTGGATGCTT
TGTTCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W2CNH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461

Multiple sequence alignment