Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   E8M06_RS10325 Genome accession   NZ_CP039462
Coordinates   2117338..2117787 (-) Length   149 a.a.
NCBI ID   WP_015647494.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112338..2122787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS10310 (E8M06_10320) - 2112971..2113765 (+) 795 WP_136581626.1 formate/nitrite transporter family protein -
  E8M06_RS10315 (E8M06_10325) - 2113854..2115638 (-) 1785 WP_136581627.1 ABC transporter ATP-binding protein -
  E8M06_RS10320 (E8M06_10330) - 2115639..2117345 (-) 1707 WP_136581628.1 ABC transporter ATP-binding protein -
  E8M06_RS10325 (E8M06_10335) rcrR 2117338..2117787 (-) 450 WP_015647494.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  E8M06_RS10330 (E8M06_10340) - 2118009..2119025 (+) 1017 WP_136581629.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  E8M06_RS10335 (E8M06_10345) galU 2119070..2119969 (+) 900 WP_105141604.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  E8M06_RS10340 (E8M06_10350) - 2119988..2120665 (-) 678 WP_004298343.1 rhomboid family intramembrane serine protease -
  E8M06_RS10345 (E8M06_10355) - 2120649..2121191 (-) 543 WP_136581630.1 5-formyltetrahydrofolate cyclo-ligase -
  E8M06_RS10350 (E8M06_10360) - 2121233..2122360 (-) 1128 WP_136581631.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17577.16 Da        Isoelectric Point: 8.8975

>NTDB_id=317971 E8M06_RS10325 WP_015647494.1 2117338..2117787(-) (rcrR) [Streptococcus suis strain WUSS351]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVANQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=317971 E8M06_RS10325 WP_015647494.1 2117338..2117787(-) (rcrR) [Streptococcus suis strain WUSS351]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGCCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416