Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D7385_RS11300 Genome accession   NZ_CP032670
Coordinates   2211669..2213474 (-) Length   601 a.a.
NCBI ID   WP_012580891.1    Uniprot ID   A0A0E0UZ98
Organism   Listeria monocytogenes strain 52860     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206669..2218474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7385_RS11280 (D7385_11300) isdE 2207593..2208465 (-) 873 WP_070221211.1 heme ABC transporter substrate-binding protein IsdE -
  D7385_RS11285 (D7385_11305) hbp2 2208552..2210261 (-) 1710 WP_012580893.1 hemin/hemoglobin-binding protein Hbp2 -
  D7385_RS11290 (D7385_11310) isdC 2210274..2210900 (-) 627 WP_070221213.1 heme uptake protein IsdC -
  D7385_RS11295 (D7385_11315) - 2211111..2211371 (-) 261 WP_003729592.1 DUF3116 family protein -
  D7385_RS11300 (D7385_11320) pepF 2211669..2213474 (-) 1806 WP_012580891.1 oligoendopeptidase F Regulator
  D7385_RS11305 (D7385_11325) - 2213547..2214662 (-) 1116 WP_149052337.1 competence protein CoiA -
  D7385_RS11310 (D7385_11330) mecA 2214789..2215442 (-) 654 WP_003722314.1 adaptor protein MecA -
  D7385_RS11315 (D7385_11335) spxA 2215676..2216071 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  D7385_RS11320 (D7385_11340) - 2216391..2217359 (-) 969 WP_069891137.1 ABC transporter ATP-binding protein -
  D7385_RS11325 (D7385_11345) - 2217356..2218432 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68574.70 Da        Isoelectric Point: 4.5711

>NTDB_id=317963 D7385_RS11300 WP_012580891.1 2211669..2213474(-) (pepF) [Listeria monocytogenes strain 52860]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEESEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYEDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQQGV
ALTADFLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=317963 D7385_RS11300 WP_012580891.1 2211669..2213474(-) (pepF) [Listeria monocytogenes strain 52860]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTAACTACGATTTATCCAAA
TGATGAAGCTTGGGAACAAGCATTTACAGATTTGCAAAAAATCACAGAAGAAAGCGAGCAATTTAAAGGGCGTTTATCGG
AAAGCAGCCAGACACTATATGAAGCACTTCAATTTCGAGATAATGCATATGATTTAATTAGTAACTTATATGTATATGCG
CATTTGAAAATGGACCAAGATACAGCTAATGCGAAATATCAAGGTTTACATAGTCGCGCAGGAAGCCTAGTTACAAAGCT
AATGTCTGCACTGTCTTATTATGATCCGGAAATTTTAGCTATGGACGAAAGTGTTTTAAAACAATTTTTAAATGAGAACA
AAGATTTACAATTATATGCGCATTTACTAGAAGAATTAAATTTAAGCCGACCGTATATTTTAAGTGAGAAGGAGGAGGCT
TTACTAGCTAACGCAGGTGAAGTGCTTGGAAGTTCGTCTAATACTTTTAATACCTTGAATAATGCAGATATGAAGTTTCC
AACTATTAAAGATGAGAACGGGGAAGATATCGAAATTACTCATGGTCGTTTCGGGAAATTGTTGGAAAGCAATGATCCAC
GTGTTCGTCGTGAAGCGTTTCTTGGTGTGTATTCTGTGTATGAAGGCCTAAAGAACACCTTAGCATCTACTTTAAATGGA
CAAGTGAAGAAGTCTAATTTTTATGCCTCTACTCGTGGCTACACGTCAGCTCGTGAAGCGGCTCTTTCTGGGAACCATAT
TCCTGAAACAGTATATGATTCGTTGTTAAAATCAGTAAATGCGAATGCAGATTTGCTTCATCGTTATGTGAAGTTGCGTA
AAGAATTACTTGGCTTAGAGGAATTGCATATGTATGATCTTTATACCCCACTTTCTGATGATGTTAATTTGGAATTTACT
TATGAAGAAGCGAAAGAACTTGTGCTTGAAGCGCTTAAACCGCTTGGTGATGAATATCAAGCAATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTTATGGAGAATAAAGGGAAACGTAGTGGAGCCTATTCATCTGGTTCATATAGTACGAATC
CTTATATTTTACTCAATTGGCAAGATAATATTAATAATGTTTATACACTTGCGCATGAATTAGGGCATAGTGTGCATAGT
TATTATACAAGAAAAAATCAACCTTTTGTTTATGGCGATTATTCGATTTTCTTGGCAGAAGTTGCTTCTACGACCAATGA
AAATCTGTTGACTGATTATCTGCTTAAGAAATATGAGGATCCTAAGGTACGTGCTTATTTGTTGAATCACTATTTGGATG
GATTCAAAGGGACTGTATTCCGCCAAACGCAATTTGCTGAATTTGAGCATGCAATTCATCAAGCCGATCAACAAGGTGTG
GCGCTGACTGCGGATTTCTTAACAGAAACATATTTTGATATTAATAAGAAATATTACGGAGAAGCGATGGTTTATGATGC
TGAAATTGGTTATGAATGGTCTCGTATTCCGCATTTTTATATGAATTATTATGTGTTCCAATATGCGACTGGTTTTTCTG
CAGCGTCTGCATTGAGTGCGAAGATTTTAACAGAAGGCCAAGAAGCGGTAACTGCCTATATTGATTTCTTGAAAGCGGGA
AGTTCGGATTACCCTATCGATGTGTTGAAAAAAGCAGGAGTTGATATGGCAACTCCTAATCCGGTGGATGATGCACTAAA
AGTATTTGAACAAAGATTAGACGAACTAGAAAAATTAGTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0UZ98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.502

0.506

Multiple sequence alignment