Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECO111_RS23330 Genome accession   NC_013364
Coordinates   4479292..4479960 (-) Length   222 a.a.
NCBI ID   WP_001369511.1    Uniprot ID   -
Organism   Escherichia coli O111:H- str. 11128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4474292..4484960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO111_RS23300 (ECO111_4454) rfaQ 4474470..4475528 (-) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -
  ECO111_RS23305 (ECO111_4455) waaA 4475941..4477218 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ECO111_RS23310 (ECO111_4456) coaD 4477226..4477705 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ECO111_RS23315 (ECO111_4457) mutM 4477744..4478553 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ECO111_RS23320 (ECO111_4458) rpmG 4478651..4478818 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  ECO111_RS23325 (ECO111_4459) rpmB 4478839..4479075 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  ECO111_RS23330 (ECO111_4460) radC 4479292..4479960 (-) 669 WP_001369511.1 RadC family protein Machinery gene
  ECO111_RS23335 (ECO111_4461) coaBC 4480132..4481352 (+) 1221 WP_000050144.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ECO111_RS23340 (ECO111_4462) dut 4481330..4481788 (+) 459 WP_000976070.1 dUTP diphosphatase -
  ECO111_RS23345 (ECO111_4463) slmA 4481895..4482491 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ECO111_RS23350 (ECO111_4464) pyrE 4482528..4483169 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  ECO111_RS23355 (ECO111_4465) rph 4483235..4483951 (-) 717 WP_001247089.1 ribonuclease PH -
  ECO111_RS23360 (ECO111_4466) yicC 4484078..4484941 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25200.31 Da        Isoelectric Point: 8.4958

>NTDB_id=31795 ECO111_RS23330 WP_001369511.1 4479292..4479960(-) (radC) [Escherichia coli O111:H- str. 11128]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPAMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=31795 ECO111_RS23330 WP_001369511.1 4479292..4479960(-) (radC) [Escherichia coli O111:H- str. 11128]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGCGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491

Multiple sequence alignment