Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D7405_RS11570 Genome accession   NZ_CP032668
Coordinates   2297746..2299551 (-) Length   601 a.a.
NCBI ID   WP_070307477.1    Uniprot ID   -
Organism   Listeria monocytogenes strain 52873     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2292746..2304551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7405_RS11550 (D7405_11565) isdE 2293669..2294541 (-) 873 WP_070031430.1 heme ABC transporter substrate-binding protein IsdE -
  D7405_RS11555 (D7405_11570) hbp2 2294628..2296337 (-) 1710 WP_070307475.1 hemin/hemoglobin-binding protein Hbp2 -
  D7405_RS11560 (D7405_11575) isdC 2296350..2296976 (-) 627 WP_070307476.1 heme uptake protein IsdC -
  D7405_RS11565 (D7405_11580) - 2297187..2297447 (-) 261 WP_003729592.1 DUF3116 family protein -
  D7405_RS11570 (D7405_11585) pepF 2297746..2299551 (-) 1806 WP_070307477.1 oligoendopeptidase F Regulator
  D7405_RS11575 (D7405_11590) - 2299624..2300739 (-) 1116 WP_077952617.1 competence protein CoiA -
  D7405_RS11580 (D7405_11595) mecA 2300866..2301519 (-) 654 WP_003722314.1 adaptor protein MecA -
  D7405_RS11585 (D7405_11600) spxA 2301752..2302147 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  D7405_RS11590 (D7405_11605) - 2302467..2303435 (-) 969 WP_003729595.1 ABC transporter ATP-binding protein -
  D7405_RS11595 (D7405_11610) - 2303432..2304508 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68604.73 Da        Isoelectric Point: 4.5711

>NTDB_id=317884 D7405_RS11570 WP_070307477.1 2297746..2299551(-) (pepF) [Listeria monocytogenes strain 52873]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEESEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNTNADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYEDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQQGV
ALTADFLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=317884 D7405_RS11570 WP_070307477.1 2297746..2299551(-) (pepF) [Listeria monocytogenes strain 52873]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTAACTACAATTTATCCGAA
TGATGAAGCTTGGGAACAAGCGTTTACAGATTTGCAAAAAATCACAGAAGAAAGCGAGCAATTTAAAGGGCGTTTATCGG
AAAGCAGCCAGACACTATATGAAGCACTTCAATTTCGAGATAATGCATATGATTTAATTAGTAACTTATATGTATATGCG
CATTTGAAAATGGACCAAGATACAGCTAATGCGAAATATCAAGGTTTACATAGTCGCGCAGGAAGCCTAGTTACAAAACT
AATGTCTGCACTGTCTTATTATGATCCGGAAATTTTAGCTATGGACGAAAGTGTTTTAAAACAATTTTTGAATGAGAACA
AAGATTTACAATTATATGCGCATTTACTAGAAGAGTTAAATTTAAGTCGACCGTATATTTTAAGTGAGAAAGAGGAGGCT
TTACTAGCTAACGCAGGTGAAGTGCTTGGAAGTTCGTCTAATACTTTTAATACCTTGAATAATGCAGATATGAAGTTTCC
AACGATTAAAGATGAGAACGGGGAAGATATCGAAATTACTCATGGTCGTTTCGGGAAATTGTTGGAAAGCAATGATCCAC
GTGTTCGTCGTGAAGCGTTTCTTGGTGTGTATTCTGTGTATGAAGGCCTAAAGAACACCTTAGCATCTACTTTAAATGGA
CAAGTGAAGAAGTCTAATTTTTATGCCTCTACTCGTGGCTACACGTCAGCTCGTGAAGCGGCTCTTTCTGGGAACCATAT
TCCTGAAACAGTATATGATTCGTTGCTAAAATCAGTAAATACGAATGCAGACTTGCTTCATCGTTATGTGAAGTTGCGTA
AAGAATTACTTGGCTTAGAGGAATTGCATATGTATGATCTTTATACGCCACTTTCTGATGATGTTAATTTGGAGTTTACT
TATGAAGAAGCGAAAGAACTTGTGCTTGAAGCGCTTAAACCGCTTGGTGATGAATATCAAGCAATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTTATGGAGAATAAAGGGAAACGTAGTGGAGCCTATTCATCTGGTTCATATAGTACGAATC
CTTATATTTTACTCAATTGGCAAGATAATATTAATAATGTTTATACACTTGCGCACGAATTAGGGCATAGTGTGCATAGT
TATTATACAAGAAAAAATCAACCTTTTGTTTACGGCGATTATTCGATTTTCTTGGCAGAAGTTGCTTCTACGACCAATGA
AAATCTGTTGACTGATTATCTGCTTAAGAAATATGAGGATCCTAAGGTACGTGCTTATTTGTTGAATCACTATTTGGATG
GATTCAAAGGGACTGTATTCCGCCAAACGCAATTTGCTGAATTTGAGCATGCAATTCATCAAGCCGATCAACAAGGTGTG
GCGCTGACTGCGGATTTCTTAACAGAAACATATTTTGATATTAATAAGAAATATTACGGAGAAGCGATGGTTTATGATGC
AGAAATTGGTTATGAATGGTCTCGTATTCCGCATTTTTATATGAATTATTATGTGTTCCAATATGCGACTGGTTTTTCTG
CAGCGTCTGCATTGAGTGCGAAGATTTTAACAGAAGGCCAAGAAGCGGTAACTGCCTATATTGATTTCTTGAAAGCGGGA
AGTTCGGATTATCCTATCGATGTGTTGAAAAAAGCAGGAGTTGATATGGCAACTCCTAATCCGGTGGATGATGCACTAAA
AGTATTTGAACAAAGATTAGATGAACTAGAAAAATTAGTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.502

0.506

Multiple sequence alignment