Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   E8M06_RS00215 Genome accession   NZ_CP039462
Coordinates   28478..29260 (+) Length   260 a.a.
NCBI ID   WP_024413296.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23478..34260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS00195 (E8M06_00195) mreD 24299..24814 (+) 516 WP_015646212.1 rod shape-determining protein MreD -
  E8M06_RS00200 (E8M06_00200) - 24899..26155 (+) 1257 WP_024394838.1 CHAP domain-containing protein -
  E8M06_RS00205 (E8M06_00205) - 26258..27226 (+) 969 WP_024409044.1 ribose-phosphate diphosphokinase -
  E8M06_RS00210 (E8M06_00210) - 27313..28491 (+) 1179 WP_024389653.1 pyridoxal phosphate-dependent aminotransferase -
  E8M06_RS00215 (E8M06_00215) recO 28478..29260 (+) 783 WP_024413296.1 DNA repair protein RecO Machinery gene
  E8M06_RS00220 (E8M06_00220) plsX 29257..30264 (+) 1008 WP_136580992.1 phosphate acyltransferase PlsX -
  E8M06_RS00225 (E8M06_00225) - 30257..30505 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  E8M06_RS00230 (E8M06_00230) purC 30623..31330 (+) 708 WP_105143006.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30505.00 Da        Isoelectric Point: 5.4193

>NTDB_id=317883 E8M06_RS00215 WP_024413296.1 28478..29260(+) (recO) [Streptococcus suis strain WUSS351]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLMGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=317883 E8M06_RS00215 WP_024413296.1 28478..29260(+) (recO) [Streptococcus suis strain WUSS351]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCCCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCATGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669