Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D7405_RS01195 Genome accession   NZ_CP032668
Coordinates   246564..247937 (+) Length   457 a.a.
NCBI ID   WP_003729197.1    Uniprot ID   A0A0E0USD9
Organism   Listeria monocytogenes strain 52873     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 241564..252937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7405_RS01175 (D7405_01175) - 241918..242376 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  D7405_RS01180 (D7405_01180) - 242389..242907 (+) 519 WP_070307510.1 UvrB/UvrC motif-containing protein -
  D7405_RS01185 (D7405_01185) - 242904..243926 (+) 1023 WP_070307511.1 protein arginine kinase -
  D7405_RS01190 (D7405_01190) - 243955..246417 (+) 2463 WP_003729198.1 ATP-dependent Clp protease ATP-binding subunit -
  D7405_RS01195 (D7405_01195) radA 246564..247937 (+) 1374 WP_003729197.1 DNA repair protein RadA Machinery gene
  D7405_RS01200 (D7405_01200) - 248071..249144 (+) 1074 WP_069009920.1 PIN/TRAM domain-containing protein -
  D7405_RS01205 (D7405_01205) ispD 249164..249862 (+) 699 WP_012582075.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D7405_RS01210 (D7405_01210) ispF 249855..250328 (+) 474 WP_003740385.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  D7405_RS01215 (D7405_01215) gltX 250347..251822 (+) 1476 WP_003729193.1 glutamate--tRNA ligase -
  D7405_RS01220 (D7405_01220) epsC 252222..252836 (+) 615 WP_003726845.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50006.64 Da        Isoelectric Point: 7.6580

>NTDB_id=317863 D7405_RS01195 WP_003729197.1 246564..247937(+) (radA) [Listeria monocytogenes strain 52873]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIESETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=317863 D7405_RS01195 WP_003729197.1 246564..247937(+) (radA) [Listeria monocytogenes strain 52873]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCTAAATGGATGGGAAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAAGCTTTGGAGCCATCAAAAAAATCGCGCTCAGCTTTTAATCATACGGGAG
AGCCTTCGAAAGCGACTCCGATTACTCAAATAGAAAGTGAAACAGAAAAACGTGTCGAAACCAATATGCCGGAGTTAAAT
AGGGTTCTTGGTGGAGGTGTGGTTCCAGGATCTATGGTACTTGTCGGCGGGGACCCTGGTATCGGGAAGTCGACTTTATT
ACTGCAAGTTTCAGCTCAACTGACTCTCACAAATAAAAAAGTATTGTATATATCAGGAGAAGAATCTATCAAACAAACGA
AGCTGCGGGCGGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCTGATTTTGTAGTCATTGACTCTATTCAGACGGTTTATCATCCGGATGTTACGAGTGCAGC
AGGTAGTGTTTCGCAAGTTAGGGAATGTACAGCGGCATTGATGCGAATTGCTAAAATGCAAAACATTGCAATTTTTATTG
TTGGGCATGTAACGAAGGAAGGTGCTATTGCGGGACCGCGTCTGCTTGAACATATGGTTGATACTGTGCTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAATGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTAGTTGAAGTTGCTAATCCTTCCGAAGTGTTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGGACTCGTCCAGTTCTTGTGGAAATTCAAGCGCTTGTTTCACCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCGCTAATTATGGCCGTTTTAGAAAAAAGAGTAGGTTT
GATGCTACAAAACCAAGACGCTTACTTGAAAGCAGCGGGCGGGGTTAAGCTAGATGAACCTGCAGTGGATTTGGCGGTTG
CAGTGAGTGTGGCGTCTAGTTATCGTGATAAACCAACGAGAAGTACAGATTGTTTTATCGGAGAACTTGGACTTACGGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTGCAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCGAA
AAACAATGAAGGTACTTGGAAAATACCAAAAGACGTGCAAGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643

Multiple sequence alignment