Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   E8M03_RS00365 Genome accession   NZ_CP039448
Coordinates   81288..81701 (+) Length   137 a.a.
NCBI ID   WP_000998780.1    Uniprot ID   C1PH97
Organism   Staphylococcus aureus strain VGC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 76288..86701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M03_RS00345 (E8M03_00355) - 76289..77575 (+) 1287 WP_000513494.1 SIR2 family protein -
  E8M03_RS00350 (E8M03_00360) - 77581..79269 (+) 1689 WP_114647773.1 ATP-binding protein -
  E8M03_RS14660 - 79430..79567 (+) 138 WP_021758025.1 hypothetical protein -
  E8M03_RS00355 (E8M03_00365) - 79830..80441 (+) 612 WP_000856594.1 hypothetical protein -
  E8M03_RS00360 (E8M03_00370) - 80780..81187 (-) 408 WP_000173401.1 hypothetical protein -
  E8M03_RS00365 (E8M03_00375) lrpC 81288..81701 (+) 414 WP_000998780.1 Lrp/AsnC family transcriptional regulator Machinery gene
  E8M03_RS00375 (E8M03_00385) - 81763..82236 (+) 474 WP_000455975.1 GNAT family N-acetyltransferase -
  E8M03_RS00380 (E8M03_00390) - 82344..83330 (-) 987 WP_000662031.1 tRNA-dihydrouridine synthase -
  E8M03_RS00385 (E8M03_00395) - 83638..83841 (+) 204 WP_000389759.1 DUF6007 family protein -
  E8M03_RS00390 (E8M03_00400) - 83890..84186 (+) 297 WP_000179901.1 TfoX/Sxy family protein -
  E8M03_RS00395 (E8M03_00405) - 84248..85468 (-) 1221 WP_000130756.1 MFS transporter -
  E8M03_RS00400 (E8M03_00410) - 85461..86012 (-) 552 WP_000627025.1 flavodoxin family protein -
  E8M03_RS00405 (E8M03_00415) - 86125..86637 (+) 513 Protein_75 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15971.29 Da        Isoelectric Point: 4.6692

>NTDB_id=317680 E8M03_RS00365 WP_000998780.1 81288..81701(+) (lrpC) [Staphylococcus aureus strain VGC1]
MNDLINEKIINVLLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDF
KEFISKQDNVEFCYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQTKCQFIFSSVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=317680 E8M03_RS00365 WP_000998780.1 81288..81701(+) (lrpC) [Staphylococcus aureus strain VGC1]
ATGAATGACTTAATAAATGAAAAAATAATCAATGTTTTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACA
AGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGTAAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTA
ACATAGATTATAAGGAATTAGGTTACGATGTAGAAATATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTT
AAAGAATTTATTTCAAAACAAGATAATGTTGAGTTTTGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCG
GTTGGAAAATATGGATGAAGTGGAAACATTTGTTGATACCATACAACCATATGGGCAGACAAAATGTCAGTTTATCTTTT
CATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1PH97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

43.284

97.81

0.423