Detailed information NTG0317657

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E9097_RS19465
• Genome accession: NZ_CP039404
• Coordinates: 3831329..3832321 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 377323_2f
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3826329..3837321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E9097_RS19445 (E9097_19445)	ygbM	3826960..3827736 (+)	777	WP_001357575.1	HPr family phosphocarrier protein	-
E9097_RS19450 (E9097_19450)	ygbN	3827825..3829189 (+)	1365	WP_000104433.1	GntP family transporter	-
E9097_RS19455 (E9097_19455)	-	3829332..3830375 (-)	1044	WP_024240246.1	MBL fold metallo-hydrolase	-
E9097_RS19460 (E9097_19460)	-	3830600..3831151 (+)	552	WP_001179443.1	flavodoxin family protein	-
E9097_RS19465 (E9097_19465)	rpoS	3831329..3832321 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E9097_RS19470 (E9097_19470)	nlpD	3832384..3833478 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
E9097_RS19475 (E9097_19475)	pcm	3833663..3834289 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
E9097_RS19480 (E9097_19480)	surE	3834283..3835044 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E9097_RS19485 (E9097_19485)	truD	3835025..3836074 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
E9097_RS19490 (E9097_19490)	ispF	3836071..3836550 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E9097_RS19495 (E9097_19495)	ispD	3836550..3837260 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=317657 E9097_RS19465 WP_000081550.1 3831329..3832321(-) (rpoS) [Escherichia coli strain 377323_2f]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=317657 E9097_RS19465 WP_000081550.1 3831329..3832321(-) (rpoS) [Escherichia coli strain 377323_2f]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715