Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECO111_RS13895 Genome accession   NC_013364
Coordinates   2609562..2610038 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O111:H- str. 11128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2604562..2615038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO111_RS33840 - 2605482..2605697 (+) 216 Protein_2655 TonB-dependent receptor -
  ECO111_RS13865 - 2605740..2606024 (-) 285 Protein_2656 integrase core domain-containing protein -
  ECO111_RS13870 (ECO111_2642) - 2606039..2606698 (+) 660 WP_000068481.1 hypothetical protein -
  ECO111_RS13875 (ECO111_2643) - 2606834..2607517 (+) 684 WP_000775497.1 hypothetical protein -
  ECO111_RS13880 (ECO111_2644) - 2607533..2607943 (+) 411 WP_000846711.1 hypothetical protein -
  ECO111_RS13885 (ECO111_2645) - 2608164..2608985 (+) 822 WP_001234505.1 DUF932 domain-containing protein -
  ECO111_RS13890 (ECO111_2646) - 2609067..2609546 (+) 480 WP_000860076.1 antirestriction protein -
  ECO111_RS13895 (ECO111_2647) radC 2609562..2610038 (+) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  ECO111_RS13900 (ECO111_2648) yeeT 2610107..2610328 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  ECO111_RS13905 (ECO111_2649) cbeA 2610402..2610770 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ECO111_RS13910 (ECO111_2650) cbtA 2610859..2611232 (+) 374 Protein_2665 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ECO111_RS13915 (ECO111_2651) yeeW 2611229..2611423 (+) 195 WP_000988599.1 DUF5983 family protein -
  ECO111_RS34130 - 2611469..2611549 (+) 81 Protein_2667 hypothetical protein -
  ECO111_RS35230 - 2611838..2612011 (-) 174 WP_032082634.1 transposase domain-containing protein -
  ECO111_RS35235 - 2612038..2612220 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  ECO111_RS13935 (ECO111_2653) tmaR 2612321..2612650 (-) 330 WP_000450409.1 DUF496 family protein -
  ECO111_RS13940 (ECO111_2655) yeeA 2612822..2613881 (-) 1060 Protein_2671 FUSC family protein -
  ECO111_RS13945 (ECO111_2656) sbmC 2614079..2614552 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=31765 ECO111_RS13895 WP_001186773.1 2609562..2610038(+) (radC) [Escherichia coli O111:H- str. 11128]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=31765 ECO111_RS13895 WP_001186773.1 2609562..2610038(+) (radC) [Escherichia coli O111:H- str. 11128]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment