Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E9097_RS15400 Genome accession   NZ_CP039404
Coordinates   2993958..2995385 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain 377323_2f     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2988958..3000385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E9097_RS15370 (E9097_15370) pduU 2989336..2989686 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  E9097_RS15375 (E9097_15375) - 2989691..2990134 (+) 444 WP_001189435.1 EutP/PduV family microcompartment system protein -
  E9097_RS15380 (E9097_15380) tmaR 2990234..2990563 (-) 330 WP_000450409.1 DUF496 family protein -
  E9097_RS15385 (E9097_15385) yeeA 2990735..2991793 (-) 1059 WP_001200890.1 FUSC family protein -
  E9097_RS15390 (E9097_15390) sbmC 2991991..2992464 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  E9097_RS15395 (E9097_15395) dacD 2992583..2993749 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E9097_RS15400 (E9097_15400) sbcB 2993958..2995385 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  E9097_RS15405 (E9097_15405) plaP 2995459..2996817 (-) 1359 WP_053880142.1 putrescine/proton symporter PlaP -
  E9097_RS15410 (E9097_15410) yoeI 2996807..2996869 (-) 63 WP_010723108.1 membrane protein YoeI -
  E9097_RS15415 (E9097_15415) yeeY 2997084..2998013 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  E9097_RS15420 (E9097_15420) yeeZ 2998059..2998883 (-) 825 WP_021524296.1 SDR family oxidoreductase -
  E9097_RS15425 (E9097_15425) yoeB 2998966..2999220 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  E9097_RS15430 (E9097_15430) yefM 2999217..2999468 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  E9097_RS15440 (E9097_15440) hisL 2999751..2999801 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=317644 E9097_RS15400 WP_000980557.1 2993958..2995385(+) (sbcB) [Escherichia coli strain 377323_2f]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=317644 E9097_RS15400 WP_000980557.1 2993958..2995385(+) (sbcB) [Escherichia coli strain 377323_2f]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583