Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CFK27_RS13680 Genome accession   NZ_CP032654
Coordinates   2989845..2991599 (+) Length   584 a.a.
NCBI ID   WP_120769461.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain ZFM222     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2984845..2996599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK27_RS13660 (CFK27_13660) - 2985050..2986468 (-) 1419 WP_231127809.1 MDR family MFS transporter -
  CFK27_RS13665 (CFK27_13665) - 2986489..2987112 (-) 624 WP_105960918.1 FMN-dependent NADH-azoreductase -
  CFK27_RS13670 (CFK27_13670) - 2987318..2987767 (+) 450 WP_105960919.1 MarR family winged helix-turn-helix transcriptional regulator -
  CFK27_RS13675 (CFK27_13675) rcrP 2988082..2989845 (+) 1764 WP_105960920.1 ABC transporter ATP-binding protein Regulator
  CFK27_RS13680 (CFK27_13680) rcrQ 2989845..2991599 (+) 1755 WP_120769461.1 ABC transporter ATP-binding protein Regulator
  CFK27_RS13685 (CFK27_13685) - 2991778..2992398 (+) 621 WP_120769462.1 hypothetical protein -
  CFK27_RS13690 (CFK27_13690) - 2992586..2993167 (+) 582 WP_162937103.1 uracil-DNA glycosylase family protein -
  CFK27_RS13695 (CFK27_13695) - 2993266..2993604 (+) 339 WP_120769464.1 IS1096 element passenger TnpR family protein -
  CFK27_RS17325 - 2993936..2994091 (+) 156 WP_162937058.1 hypothetical protein -
  CFK27_RS13700 (CFK27_13700) - 2994060..2994428 (+) 369 WP_056953138.1 6-carboxytetrahydropterin synthase -
  CFK27_RS13705 (CFK27_13705) - 2994698..2995123 (-) 426 WP_120769465.1 flavodoxin family protein -
  CFK27_RS13710 (CFK27_13710) - 2995342..2995548 (+) 207 WP_105920149.1 DUF3923 family protein -
  CFK27_RS13715 (CFK27_13715) arsC 2995592..2996005 (+) 414 WP_105920150.1 arsenate reductase (thioredoxin) -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64040.33 Da        Isoelectric Point: 4.8006

>NTDB_id=317643 CFK27_RS13680 WP_120769461.1 2989845..2991599(+) (rcrQ) [Lactiplantibacillus pentosus strain ZFM222]
MDKPKTGILAGIRKYGKNYLYAMIVAALMAVVGNIATLLGPNQLSRITNLISKGLRGSIDLQAIGQIVLVLAIIYAVGAI
MSYGQGYIMATVSQAFTRDLRNNVSHKINRLPLTYFDEHDEGDTLSRVTNDLDTFGQSLNQSLGTLISSVVLIVGSIIMM
TYTNWILSLTAVVSAVLGMTITVLLLRKSQGYFTSQQQQLAEVSGYVEEIYSGHEVVKLYNDTDNAVKTFTSLNTKLYNS
VWKSQFLSGIMQPLMTFIGNFGYVAVSVVGALLVLNGTASIGVIVAFMVFVRIFTQPLSQITQAFSSLQSAQAAFRRVLD
FLDEDEASTDEQGVATIERASGKIDFDHVNFEYEPGEPIIKDFSAHVKPGQKVAIVGPTGAGKTTLISLLMKFYQYQGGT
IKLDDQDIANLSAADVRSQFDMVLQDAWLFEDTVMANLKYNQPDIPDETVYKATEVVGLDHFIKTLPDGYDTVLDDSVSL
SVGQKQLMTIARALVRNKPMLILDEATSSVDTRTEEQLQKAMDVLTKGRTSLVIAHRLSTIKNADNILVLNHGEVIESGT
HDELLEADGFYANLYNSQFESLTA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=317643 CFK27_RS13680 WP_120769461.1 2989845..2991599(+) (rcrQ) [Lactiplantibacillus pentosus strain ZFM222]
ATGGACAAACCAAAAACAGGGATTCTTGCTGGAATTCGTAAATATGGAAAAAACTATTTATACGCGATGATTGTCGCAGC
GCTAATGGCAGTTGTCGGTAATATTGCGACGTTGTTAGGGCCAAATCAGCTCAGTCGAATCACCAATCTGATTTCAAAGG
GCTTACGAGGCAGTATCGACCTACAAGCGATTGGTCAAATTGTGCTTGTCCTAGCGATTATCTATGCCGTTGGGGCCATC
ATGTCATATGGTCAAGGTTATATCATGGCAACGGTCTCGCAAGCATTCACGCGGGATCTGCGGAACAATGTCTCTCACAA
AATCAACCGATTACCATTGACTTACTTTGACGAACACGATGAAGGGGACACCTTATCGCGAGTCACGAACGATTTGGACA
CTTTTGGACAGTCGCTGAATCAAAGCTTGGGAACGTTGATTTCATCGGTTGTTTTAATCGTCGGGTCGATTATCATGATG
ACCTATACTAACTGGATCCTCAGTTTAACGGCAGTTGTTTCCGCTGTGCTGGGGATGACCATCACGGTCTTGTTATTACG
AAAGTCGCAGGGGTACTTCACGAGCCAACAACAGCAGTTAGCGGAAGTATCCGGGTATGTTGAAGAAATCTATTCCGGAC
ATGAAGTCGTTAAGTTATATAACGATACCGATAACGCGGTCAAAACTTTTACATCATTGAATACGAAACTTTACAATTCC
GTTTGGAAGTCACAATTCCTGTCAGGTATTATGCAGCCATTAATGACTTTTATTGGGAATTTCGGTTACGTTGCCGTGAG
TGTTGTCGGTGCGTTACTAGTGCTTAACGGCACGGCTAGCATTGGCGTCATCGTTGCTTTCATGGTCTTTGTCAGAATCT
TTACACAGCCACTATCACAGATCACGCAGGCTTTCTCTAGCTTGCAATCTGCTCAGGCTGCCTTCAGACGAGTTCTTGAT
TTCCTTGACGAAGACGAAGCAAGTACAGATGAACAAGGTGTAGCGACGATTGAACGAGCAAGTGGCAAAATCGATTTTGA
TCACGTTAATTTTGAATACGAGCCCGGAGAACCAATTATTAAAGATTTCTCAGCACATGTAAAACCAGGGCAAAAGGTGG
CCATTGTTGGTCCGACGGGCGCTGGTAAAACGACTTTGATTAGTCTGTTGATGAAATTTTATCAGTATCAAGGTGGAACG
ATTAAGCTGGATGATCAAGATATTGCTAACTTGTCAGCAGCGGACGTTCGGTCACAATTTGATATGGTGCTGCAAGATGC
TTGGCTATTTGAAGACACCGTTATGGCTAATTTGAAGTATAATCAGCCGGATATTCCGGATGAAACGGTCTATAAAGCGA
CCGAGGTCGTTGGCTTAGATCACTTCATCAAGACGCTACCGGATGGTTATGATACCGTCTTAGATGATTCAGTCAGTCTA
TCCGTTGGGCAAAAGCAATTAATGACGATTGCGCGTGCTTTGGTTCGCAATAAGCCGATGCTGATTTTGGATGAAGCCAC
AAGTTCGGTCGATACTAGAACGGAAGAACAACTGCAAAAAGCCATGGATGTGTTGACTAAGGGTCGGACTTCATTAGTTA
TTGCTCACCGGTTATCGACGATCAAAAATGCGGACAATATTTTAGTGCTAAATCACGGTGAAGTCATCGAGTCCGGGACG
CACGATGAATTGCTTGAGGCGGATGGGTTCTATGCTAACTTGTATAACAGTCAATTTGAATCGTTGACGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.577

99.144

0.541

Multiple sequence alignment