Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CFK27_RS13675 Genome accession   NZ_CP032654
Coordinates   2988082..2989845 (+) Length   587 a.a.
NCBI ID   WP_105960920.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain ZFM222     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983082..2994845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK27_RS13660 (CFK27_13660) - 2985050..2986468 (-) 1419 WP_231127809.1 MDR family MFS transporter -
  CFK27_RS13665 (CFK27_13665) - 2986489..2987112 (-) 624 WP_105960918.1 FMN-dependent NADH-azoreductase -
  CFK27_RS13670 (CFK27_13670) - 2987318..2987767 (+) 450 WP_105960919.1 MarR family winged helix-turn-helix transcriptional regulator -
  CFK27_RS13675 (CFK27_13675) rcrP 2988082..2989845 (+) 1764 WP_105960920.1 ABC transporter ATP-binding protein Regulator
  CFK27_RS13680 (CFK27_13680) rcrQ 2989845..2991599 (+) 1755 WP_120769461.1 ABC transporter ATP-binding protein Regulator
  CFK27_RS13685 (CFK27_13685) - 2991778..2992398 (+) 621 WP_120769462.1 hypothetical protein -
  CFK27_RS13690 (CFK27_13690) - 2992586..2993167 (+) 582 WP_162937103.1 uracil-DNA glycosylase family protein -
  CFK27_RS13695 (CFK27_13695) - 2993266..2993604 (+) 339 WP_120769464.1 IS1096 element passenger TnpR family protein -
  CFK27_RS17325 - 2993936..2994091 (+) 156 WP_162937058.1 hypothetical protein -
  CFK27_RS13700 (CFK27_13700) - 2994060..2994428 (+) 369 WP_056953138.1 6-carboxytetrahydropterin synthase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 63609.62 Da        Isoelectric Point: 6.6243

>NTDB_id=317642 CFK27_RS13675 WP_105960920.1 2988082..2989845(+) (rcrP) [Lactiplantibacillus pentosus strain ZFM222]
MKKLLGRLNKKEWGLIGLSALLIIIQVGLELQIPSYMTQITTALEMKGTSTSDVLKPGGLMLMLSILSMLTSIAVGFIAA
KVAAGFAARLRASVFGQVMDYSNADIKQFSVPSLLTRSTNDITQIQQFVAMGMQVIIKAPITAIWAISKIANKGWQWTTA
TGVAVLVLVAMLTVILTLVQPRFKIVQGLTDRLNAVIRENLNGIRVVHAYNAEDYQNNKFQTANDNLTKTNLFANRVLAL
MNPGMSLISNGLTLAVYAIGAVLIQSAVMSSKLSLFSNMIVFSSYAMQVIMGFLLLSIIFVILPRVTVSISRINEVLDVA
PSIHYPSESVTPVTSQAVIEFRDVSFRFAATEANVINHLSFTVQPGQTLAIIGSTGSGKTTVLDLLARRYDVTEGEILVD
GVNVKAYPEAELNRKIGYVPQKAVLFSGTIRSNIDFGQTDEHAAALTDDEINEALAIAQASDFVDESTDGLDTPVAQHGD
NFSGGQKQRLAIARAVARKSAILMFDDSFSALDYATDQKLRHALREKASGTTKVIVAQRISTIMDADQIIVLDEGNVAGI
GTHQSLLADNQVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=317642 CFK27_RS13675 WP_105960920.1 2988082..2989845(+) (rcrP) [Lactiplantibacillus pentosus strain ZFM222]
ATGAAAAAATTACTGGGACGATTGAATAAGAAAGAATGGGGATTAATTGGGCTCAGCGCACTTTTGATTATCATTCAGGT
TGGGTTAGAACTACAGATTCCTTCTTATATGACGCAAATTACGACGGCGCTTGAAATGAAAGGCACCAGCACTAGTGACG
TACTGAAGCCTGGTGGATTGATGCTCATGTTGTCGATTCTCAGCATGTTGACGTCAATTGCTGTTGGTTTTATTGCGGCG
AAGGTTGCAGCCGGATTTGCAGCACGCTTGCGGGCTAGTGTCTTTGGTCAAGTTATGGATTACTCAAATGCTGATATTAA
ACAATTCTCAGTTCCTAGTCTGTTAACTCGGTCAACCAATGACATTACGCAGATTCAACAATTTGTCGCAATGGGGATGC
AAGTGATTATTAAAGCACCGATTACGGCAATTTGGGCGATTTCCAAGATTGCTAATAAAGGTTGGCAATGGACAACGGCT
ACAGGAGTTGCAGTGCTGGTTCTAGTGGCGATGCTGACCGTCATTTTGACCTTAGTACAGCCACGCTTCAAAATTGTGCA
AGGACTGACTGATCGTTTGAACGCAGTCATCCGCGAGAATTTGAATGGGATTCGGGTAGTCCACGCTTATAACGCAGAAG
ATTATCAAAATAATAAGTTTCAAACAGCTAACGATAATTTAACGAAGACTAACTTGTTTGCGAACCGGGTCTTGGCACTG
ATGAATCCGGGAATGTCACTAATTTCAAATGGTTTGACGTTGGCCGTGTACGCAATTGGTGCAGTGTTGATTCAGTCGGC
GGTCATGAGCAGTAAATTATCGTTATTCTCAAATATGATCGTCTTTTCATCATATGCAATGCAAGTCATCATGGGATTCT
TGTTACTTTCGATTATCTTTGTGATTTTACCACGAGTCACGGTTTCAATTAGCCGAATTAATGAAGTTTTGGACGTTGCA
CCATCGATTCATTATCCATCGGAGTCGGTAACGCCAGTGACTAGTCAAGCGGTGATTGAATTTCGCGATGTCAGTTTCAG
ATTTGCAGCCACTGAGGCGAATGTCATCAATCATCTTAGCTTTACCGTGCAGCCAGGGCAAACGTTAGCGATTATTGGCT
CAACGGGTAGTGGTAAGACGACGGTCTTGGACTTACTAGCACGTCGGTACGATGTTACTGAAGGTGAAATTCTAGTTGAC
GGTGTCAATGTTAAAGCTTATCCGGAAGCAGAACTCAATCGCAAAATCGGCTATGTGCCACAAAAAGCGGTCCTATTCTC
CGGAACGATTCGCTCAAATATTGATTTTGGACAGACTGACGAGCATGCGGCAGCATTGACAGATGATGAAATCAATGAAG
CGTTAGCAATTGCACAAGCCAGTGATTTTGTTGATGAGAGTACTGATGGTTTGGATACACCGGTTGCACAACATGGTGAT
AACTTCTCTGGTGGTCAAAAGCAGCGGCTTGCAATCGCACGGGCAGTTGCGAGAAAGTCGGCCATTCTGATGTTCGACGA
TTCGTTTTCTGCACTGGATTATGCAACTGACCAAAAATTGCGACACGCCTTACGTGAAAAGGCTAGTGGAACGACAAAAG
TGATCGTGGCCCAACGCATTAGCACAATCATGGATGCAGATCAGATCATCGTGCTTGATGAAGGGAACGTTGCCGGAATT
GGGACGCATCAATCGCTACTAGCAGATAATCAAGTTTATCAAGAAATTGCATACTCACAACTGTCAAAGGAGGAATTAGC
GTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-290)

ABC transporter (ABC_tran)

(357-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.351

100

0.564

Multiple sequence alignment