Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CFK76_RS10205 Genome accession   NZ_CP032652
Coordinates   1267300..1267728 (-) Length   142 a.a.
NCBI ID   WP_151384770.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LZ217     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262300..1272728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK76_RS06515 (CFK76_06515) secA 1264016..1266379 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  CFK76_RS06520 (CFK76_06520) hpf 1266628..1267173 (-) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CFK76_RS10205 comFC 1267300..1267728 (-) 429 WP_151384770.1 ComF family protein Machinery gene
  CFK76_RS06530 (CFK76_06530) comFA 1267971..1269308 (-) 1338 WP_052039239.1 DEAD/DEAH box helicase Machinery gene
  CFK76_RS06535 (CFK76_06535) - 1269370..1270035 (+) 666 WP_025016329.1 YigZ family protein -
  CFK76_RS06540 (CFK76_06540) - 1270062..1271150 (-) 1089 WP_035144637.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16619.07 Da        Isoelectric Point: 10.2048

>NTDB_id=317612 CFK76_RS10205 WP_151384770.1 1267300..1267728(-) (comFC) [Latilactobacillus sakei strain LZ217]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=317612 CFK76_RS10205 WP_151384770.1 1267300..1267728(-) (comFC) [Latilactobacillus sakei strain LZ217]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

97.183

100

0.972
  comFC Lactococcus lactis subsp. cremoris KW2

36.62

100

0.366

Multiple sequence alignment