Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E4311_RS17675 Genome accession   NZ_CP039403
Coordinates   3572370..3572885 (-) Length   171 a.a.
NCBI ID   WP_016233486.1    Uniprot ID   -
Organism   Escherichia coli strain 382634_2f     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3567370..3577885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4311_RS17655 (E4311_17680) emrA 3567518..3568690 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E4311_RS17660 (E4311_17685) emrB 3568707..3570245 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  E4311_RS17665 (E4311_17690) - 3570503..3571210 (+) 708 WP_016233484.1 RNA ligase family protein -
  E4311_RS17670 (E4311_17695) - 3571207..3572319 (+) 1113 WP_016233485.1 ATP-binding protein -
  E4311_RS17675 (E4311_17700) luxS 3572370..3572885 (-) 516 WP_016233486.1 S-ribosylhomocysteine lyase Regulator
  E4311_RS17680 (E4311_17705) gshA 3573036..3574592 (-) 1557 WP_016233487.1 glutamate--cysteine ligase -
  E4311_RS17685 (E4311_17710) yqaA 3574665..3575093 (-) 429 WP_001287462.1 YqaA family protein -
  E4311_RS17690 (E4311_17715) yqaB 3575090..3575656 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E4311_RS17720 (E4311_17745) csrA 3576846..3577031 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19442.27 Da        Isoelectric Point: 5.5423

>NTDB_id=317575 E4311_RS17675 WP_016233486.1 3572370..3572885(-) (luxS) [Escherichia coli strain 382634_2f]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNKELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=317575 E4311_RS17675 WP_016233486.1 3572370..3572885(-) (luxS) [Escherichia coli strain 382634_2f]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACAAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment