Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E4311_RS06160 Genome accession   NZ_CP039403
Coordinates   1283910..1284515 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 382634_2f     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1278910..1289515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4311_RS23635 - 1279464..1279562 (+) 99 Protein_1173 hypothetical protein -
  E4311_RS06130 (E4311_06120) rsmS 1279615..1279776 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  E4311_RS06135 (E4311_06125) priC 1279790..1280317 (-) 528 WP_000844853.1 primosomal replication protein N'' -
  E4311_RS06140 (E4311_06130) ybaN 1280387..1280764 (+) 378 WP_001188900.1 DUF454 family protein -
  E4311_RS06145 (E4311_06135) apt 1280917..1281468 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  E4311_RS06150 (E4311_06140) dnaX 1281597..1283528 (+) 1932 WP_024231565.1 DNA polymerase III subunit gamma/tau -
  E4311_RS06155 (E4311_06145) ybaB 1283581..1283910 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E4311_RS06160 (E4311_06150) recR 1283910..1284515 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E4311_RS06165 (E4311_06155) htpG 1284625..1286499 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  E4311_RS06170 (E4311_06160) adk 1286680..1287324 (+) 645 WP_001313630.1 adenylate kinase -
  E4311_RS06175 (E4311_06165) hemH 1287456..1288418 (+) 963 WP_001250115.1 ferrochelatase -
  E4311_RS06180 (E4311_06170) aes 1288415..1289374 (-) 960 WP_000801821.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=317547 E4311_RS06160 WP_001195025.1 1283910..1284515(+) (recR) [Escherichia coli strain 382634_2f]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=317547 E4311_RS06160 WP_001195025.1 1283910..1284515(+) (recR) [Escherichia coli strain 382634_2f]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443