Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ECO111_RS06920 | Genome accession | NC_013364 |
| Coordinates | 1346342..1346818 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O111:H- str. 11128 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1341342..1351818
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECO111_RS06900 (ECO111_1300) | - | 1344272..1344592 (+) | 321 | Protein_1307 | hypothetical protein | - |
| ECO111_RS06910 (ECO111_1301) | - | 1344932..1345750 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| ECO111_RS06915 (ECO111_1302) | - | 1345841..1346326 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| ECO111_RS06920 (ECO111_1303) | radC | 1346342..1346818 (+) | 477 | WP_001186738.1 | JAB domain-containing protein | Machinery gene |
| ECO111_RS06925 (ECO111_1304) | - | 1346881..1347102 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| ECO111_RS06935 (ECO111_1305) | - | 1347265..1347639 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| ECO111_RS06940 (ECO111_1306) | - | 1347686..1348060 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| ECO111_RS06945 (ECO111_1307) | - | 1348057..1348548 (+) | 492 | WP_000976857.1 | DUF5983 family protein | - |
| ECO111_RS06950 (ECO111_1308) | - | 1348560..1348757 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| ECO111_RS06955 (ECO111_1309) | - | 1348842..1349684 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| ECO111_RS06965 (ECO111_1310) | ghrA | 1350155..1351093 (+) | 939 | WP_000351317.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=31753 ECO111_RS06920 WP_001186738.1 1346342..1346818(+) (radC) [Escherichia coli O111:H- str. 11128]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=31753 ECO111_RS06920 WP_001186738.1 1346342..1346818(+) (radC) [Escherichia coli O111:H- str. 11128]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |