Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EA665_RS15025 Genome accession   NZ_CP039343
Coordinates   3105347..3105550 (-) Length   67 a.a.
NCBI ID   WP_001984265.1    Uniprot ID   A0ABX6CCU5
Organism   Acinetobacter baumannii strain TG31302     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3100347..3110550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EA665_RS15005 (EA665_015005) - 3101842..3102507 (-) 666 WP_000515964.1 hypothetical protein -
  EA665_RS15010 (EA665_015010) - 3102563..3102751 (-) 189 WP_000642900.1 hypothetical protein -
  EA665_RS15015 (EA665_015015) - 3102751..3103425 (-) 675 WP_000560650.1 DUF3800 domain-containing protein -
  EA665_RS15020 (EA665_015020) - 3103768..3105210 (-) 1443 WP_000003532.1 hypothetical protein -
  EA665_RS15025 (EA665_015025) ssb 3105347..3105550 (-) 204 WP_001984265.1 single-stranded DNA-binding protein Machinery gene
  EA665_RS15030 (EA665_015030) - 3105883..3108348 (-) 2466 WP_001022399.1 DUF927 domain-containing protein -
  EA665_RS15035 (EA665_015035) - 3108360..3108638 (-) 279 WP_001064707.1 hypothetical protein -
  EA665_RS20125 (EA665_015040) - 3108753..3109055 (-) 303 WP_000787402.1 hypothetical protein -
  EA665_RS15045 (EA665_015045) - 3109068..3109433 (-) 366 WP_001046482.1 hypothetical protein -
  EA665_RS15050 (EA665_015050) - 3109426..3109980 (-) 555 WP_002003158.1 Bro-N domain-containing protein -
  EA665_RS15055 (EA665_015055) - 3109977..3110186 (-) 210 WP_001016479.1 helix-turn-helix domain-containing protein -
  EA665_RS15060 (EA665_015060) - 3110189..3110404 (-) 216 WP_000153154.1 hypothetical protein -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 7488.51 Da        Isoelectric Point: 9.2521

>NTDB_id=317490 EA665_RS15025 WP_001984265.1 3105347..3105550(-) (ssb) [Acinetobacter baumannii strain TG31302]
MPNVKKVTVMGVLGLNPETKQFSNGGSVTTFSVATTEFWKDKTTGERKEANSINLYQQSFKECCQRP

Nucleotide


Download         Length: 204 bp        

>NTDB_id=317490 EA665_RS15025 WP_001984265.1 3105347..3105550(-) (ssb) [Acinetobacter baumannii strain TG31302]
ATGCCAAACGTAAAGAAAGTTACTGTCATGGGTGTGTTAGGTCTTAACCCTGAAACTAAACAATTTTCCAACGGTGGCAG
CGTTACGACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACCACAGGTGAGCGTAAAGAGGCTAATAGCATAA
ATCTGTATCAACAATCGTTTAAAGAGTGTTGCCAAAGGCCGTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.02

73.134

0.373