Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | CFN54_RS06920 | Genome accession | NZ_CP032635 |
| Coordinates | 1379469..1379774 (-) | Length | 101 a.a. |
| NCBI ID | WP_016265375.1 | Uniprot ID | A0A9N7J126 |
| Organism | Latilactobacillus sakei strain ZFM225 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1374469..1384774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFN54_RS06885 (CFN54_06885) | - | 1374908..1375273 (+) | 366 | WP_011374991.1 | DUF805 domain-containing protein | - |
| CFN54_RS06895 (CFN54_06895) | - | 1375816..1376274 (-) | 459 | WP_035145008.1 | hypothetical protein | - |
| CFN54_RS06900 (CFN54_06900) | - | 1376329..1377525 (-) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| CFN54_RS06905 (CFN54_06905) | - | 1377547..1378557 (-) | 1011 | WP_016265372.1 | class I SAM-dependent methyltransferase | - |
| CFN54_RS06910 (CFN54_06910) | - | 1378681..1378947 (-) | 267 | WP_016265373.1 | hypothetical protein | - |
| CFN54_RS06915 (CFN54_06915) | comGF | 1378982..1379494 (-) | 513 | WP_035145013.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CFN54_RS06920 (CFN54_06920) | comGE | 1379469..1379774 (-) | 306 | WP_016265375.1 | hypothetical protein | Machinery gene |
| CFN54_RS06925 (CFN54_06925) | comGD | 1379761..1380165 (-) | 405 | WP_235596237.1 | hypothetical protein | Machinery gene |
| CFN54_RS06930 (CFN54_06930) | comGC | 1380185..1380484 (-) | 300 | WP_025016383.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CFN54_RS06935 (CFN54_06935) | comGB | 1380481..1381488 (-) | 1008 | WP_061827023.1 | type II secretion system F family protein | Machinery gene |
| CFN54_RS06940 (CFN54_06940) | comGA | 1381481..1382371 (-) | 891 | WP_025016380.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CFN54_RS06945 (CFN54_06945) | - | 1382488..1383219 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CFN54_RS06950 (CFN54_06950) | - | 1383310..1383810 (-) | 501 | WP_016265379.1 | VanZ family protein | - |
| CFN54_RS06955 (CFN54_06955) | - | 1383889..1384281 (+) | 393 | WP_231952369.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11439.42 Da Isoelectric Point: 11.1577
>NTDB_id=317435 CFN54_RS06920 WP_016265375.1 1379469..1379774(-) (comGE) [Latilactobacillus sakei strain ZFM225]
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKITTKAGESVAINWTTD
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKITTKAGESVAINWTTD
Nucleotide
Download Length: 306 bp
>NTDB_id=317435 CFN54_RS06920 WP_016265375.1 1379469..1379774(-) (comGE) [Latilactobacillus sakei strain ZFM225]
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTGGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGATAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTGGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGATAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Latilactobacillus sakei subsp. sakei 23K |
99.01 |
100 |
0.99 |