Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CFK78_RS10150 | Genome accession | NZ_CP032633 |
| Coordinates | 893315..893743 (+) | Length | 142 a.a. |
| NCBI ID | WP_151384770.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain ZFM220 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 888315..898743
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFK78_RS04335 (CFK78_04335) | - | 889893..890981 (+) | 1089 | WP_035144637.1 | glycosyltransferase family 4 protein | - |
| CFK78_RS04340 (CFK78_04340) | - | 891008..891673 (-) | 666 | WP_025016329.1 | YigZ family protein | - |
| CFK78_RS04345 (CFK78_04345) | comFA | 891735..893072 (+) | 1338 | WP_052039239.1 | DEAD/DEAH box helicase | Machinery gene |
| CFK78_RS10150 | comFC | 893315..893743 (+) | 429 | WP_151384770.1 | ComF family protein | Machinery gene |
| CFK78_RS04355 (CFK78_04355) | hpf | 893870..894415 (+) | 546 | WP_011374202.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| CFK78_RS04360 (CFK78_04360) | secA | 894664..897027 (+) | 2364 | WP_011374203.1 | preprotein translocase subunit SecA | - |
| CFK78_RS04365 (CFK78_04365) | prfB | 897097..898213 (+) | 1117 | WP_099049013.1 | peptide chain release factor 2 | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16619.07 Da Isoelectric Point: 10.2048
>NTDB_id=317409 CFK78_RS10150 WP_151384770.1 893315..893743(+) (comFC) [Latilactobacillus sakei strain ZFM220]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR
Nucleotide
Download Length: 429 bp
>NTDB_id=317409 CFK78_RS10150 WP_151384770.1 893315..893743(+) (comFC) [Latilactobacillus sakei strain ZFM220]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Latilactobacillus sakei subsp. sakei 23K |
97.183 |
100 |
0.972 |
| comFC | Lactococcus lactis subsp. cremoris KW2 |
36.62 |
100 |
0.366 |