Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECO111_RS01605 Genome accession   NC_013364
Coordinates   333693..334169 (-) Length   158 a.a.
NCBI ID   WP_001186787.1    Uniprot ID   -
Organism   Escherichia coli O111:H- str. 11128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328693..339169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO111_RS01570 (ECO111_0305) proA 328823..330076 (+) 1254 WP_000893251.1 glutamate-5-semialdehyde dehydrogenase -
  ECO111_RS01580 (ECO111_0306) - 330432..331256 (+) 825 Protein_301 integrase arm-type DNA-binding domain-containing protein -
  ECO111_RS30470 - 332562..332826 (-) 265 Protein_303 TA system toxin CbtA family protein -
  ECO111_RS01595 (ECO111_0309) - 333029..333323 (-) 295 Protein_304 type IV toxin-antitoxin system YeeU family antitoxin -
  ECO111_RS01600 (ECO111_0310) - 333403..333624 (-) 222 WP_000692308.1 DUF987 domain-containing protein -
  ECO111_RS01605 (ECO111_0311) radC 333693..334169 (-) 477 WP_001186787.1 JAB domain-containing protein Machinery gene
  ECO111_RS01610 (ECO111_0312) - 334185..334670 (-) 486 WP_000214420.1 antirestriction protein -
  ECO111_RS01615 (ECO111_0313) - 334762..335580 (-) 819 WP_001234405.1 DUF932 domain-containing protein -
  ECO111_RS30175 (ECO111_0314) - 335670..336608 (-) 939 WP_000480477.1 hypothetical protein -
  ECO111_RS01625 (ECO111_0315) - 336674..337084 (-) 411 WP_000642924.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17806.47 Da        Isoelectric Point: 7.6152

>NTDB_id=31740 ECO111_RS01605 WP_001186787.1 333693..334169(-) (radC) [Escherichia coli O111:H- str. 11128]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRTAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=31740 ECO111_RS01605 WP_001186787.1 333693..334169(-) (radC) [Escherichia coli O111:H- str. 11128]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTACGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.846

74.051

0.399

Multiple sequence alignment